Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.protein quality control.ER Quality Control (ERQC) machinery.BiP chaperone system.ERdj3B-BiP-SDF2 chaperone complex.chaperone component BiP

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_2 1 CH_aly_295 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_222 2 4 0.000505008
Arabidopsis thaliana Chr1 1 CH_ath_264 2 2 0.0000859476
Capsicum annuum PGAv.1.6.scaffold12 1 CH_can_430 2 3 0.000743443
Daucus carota DCARv2_Chr7 1 CH_dca_463 2 2 0.000956663
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_88 4 5 0.0000000000712953
Malus domestica Chr09 1 CH_mdo_334 3 12 0.00000948581
Malus domestica Chr03 1 CH_mdo_678 2 2 0.000568817
Petunia axillaris Peaxi162Scf00034 1 CH_pax_296 2 2 0.000422134
Punica granatum NC_045129.1 1 CH_pgr_270 2 2 0.000225107
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_567 2 2 0.000119596
Rhododendron simsii chr12 1 CH_rsi_35 6 6 2.1156e-18
Solanum lycopersicum SL4.0ch12 1 CH_sly_398 2 2 0.000176082
Solanum pennellii Spenn-ch12 1 CH_spe_460 2 3 0.000400297
Solanum tuberosum ST4.03ch12 1 CH_stu_360 2 2 0.0000512453
Theobroma cacao Chromosome_7 1 CH_tca_333 2 2 0.000219716
Trifolium pratense Tp57577_TGAC_v2_LG4 1 CH_tpr_355 2 2 0.000454184
Arabidopsis lyrata scaffold_2 2 CH_aly_295 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_222 2 4 0.000505008
Arabidopsis thaliana Chr1 2 CH_ath_264 2 2 0.0000859476
Capsicum annuum PGAv.1.6.scaffold12 2 CH_can_430 2 3 0.000743443
Daucus carota DCARv2_Chr7 2 CH_dca_463 2 2 0.000956663
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_88 4 5 0.0000000000712953
Malus domestica Chr09 2 CH_mdo_334 3 12 0.00000948581
Malus domestica Chr03 2 CH_mdo_678 2 2 0.000568817
Petunia axillaris Peaxi162Scf00034 2 CH_pax_296 2 2 0.000422134
Punica granatum NC_045129.1 2 CH_pgr_270 2 2 0.000225107
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_567 2 2 0.000119596
Rhododendron simsii chr12 2 CH_rsi_35 6 6 2.1156e-18
Solanum lycopersicum SL4.0ch12 2 CH_sly_398 2 2 0.000176082
Solanum pennellii Spenn-ch12 2 CH_spe_460 2 3 0.000400297
Solanum tuberosum ST4.03ch12 2 CH_stu_360 2 2 0.0000512453
Theobroma cacao Chromosome_7 2 CH_tca_333 2 2 0.000219716
Trifolium pratense Tp57577_TGAC_v2_LG4 2 CH_tpr_355 2 2 0.000454184

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001