Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.protein quality control.ER Quality Control (ERQC) machinery.calnexin/calreticulin chaperone system.CNX-CRT cycle.lectin chaperone (CRT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_93 3 11 0.00000205938
Arabidopsis lyrata scaffold_1 1 CH_aly_353 2 2 0.000396027
Capsella rubella scaffold_1 1 CH_cru_357 2 2 0.000438693
Erythranthe guttata scaffold_14 1 CH_egut_352 2 2 0.000218444
Gossypium raimondii Chr13 1 CH_gra_436 2 2 0.00080416
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_471 2 3 0.000462586
Striga asiatica scaffold5 1 CH_sas_108 2 2 0.000375223
Trochodendron aralioides group2 1 CH_tar_502 2 2 0.000600366
Aethionema arabicum LG-1 2 CH_aar_93 3 11 0.00000205938
Arabidopsis lyrata scaffold_1 2 CH_aly_353 2 2 0.000396027
Capsella rubella scaffold_1 2 CH_cru_357 2 2 0.000438693
Erythranthe guttata scaffold_14 2 CH_egut_352 2 2 0.000218444
Gossypium raimondii Chr13 2 CH_gra_436 2 2 0.00080416
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_471 2 3 0.000462586
Striga asiatica scaffold5 2 CH_sas_108 2 2 0.000375223
Trochodendron aralioides group2 2 CH_tar_502 2 2 0.000600366

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001