Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.protein quality control.ER Quality Control (ERQC) machinery.calnexin/calreticulin chaperone system.CNX-CRT cycle.lectin chaperone (CNX)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Carya illinoinensis | Chr05 | 1 | CH_cil_189 | 3 | 4 | 0.0000000230512 |
Nelumbo nucifera | chr4 | 1 | CH_nnu_349 | 2 | 4 | 0.000261597 |
Punica granatum | NC_045129.1 | 1 | CH_pgr_269 | 2 | 2 | 0.000225107 |
Physcomitrium patens | Chr13 | 1 | CH_ppa_279 | 2 | 2 | 0.000612726 |
Physcomitrium patens | Chr03 | 1 | CH_ppa_280 | 2 | 2 | 0.000612726 |
Phaseolus vulgaris | Chr02 | 1 | CH_pvu_261 | 2 | 2 | 0.0000734727 |
Sechium edule | LG08 | 1 | CH_sed_190 | 2 | 2 | 0.0000713419 |
Carya illinoinensis | Chr05 | 2 | CH_cil_189 | 3 | 4 | 0.0000000230512 |
Nelumbo nucifera | chr4 | 2 | CH_nnu_349 | 2 | 4 | 0.000261597 |
Punica granatum | NC_045129.1 | 2 | CH_pgr_269 | 2 | 2 | 0.000225107 |
Physcomitrium patens | Chr13 | 2 | CH_ppa_279 | 2 | 2 | 0.000612726 |
Physcomitrium patens | Chr03 | 2 | CH_ppa_280 | 2 | 2 | 0.000612726 |
Phaseolus vulgaris | Chr02 | 2 | CH_pvu_261 | 2 | 2 | 0.0000734727 |
Sechium edule | LG08 | 2 | CH_sed_190 | 2 | 2 | 0.0000713419 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |