Functional clusters

Information

  • Type MapMan
  • Description Protein modification.phosphorylation.protein serine/threonine phosphatase superfamily.PPM/PP2C Mn/Mg-dependent phosphatase families.clade J phosphatase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 1 CH_acertr_294 2 2 0.000070497
Arabidopsis lyrata scaffold_5 1 CH_aly_227 2 2 0.0000660044
Arabidopsis thaliana Chr3 1 CH_ath_217 2 2 0.0000286492
Corylus avellana 2 1 CH_cav_395 2 4 0.000459982
Coffea canephora chr1 1 CH_ccan_210 2 6 0.0000638831
Citrus clementina scaffold_3 1 CH_ccl_298 2 2 0.0000820311
Carpinus fangiana Cfa02 1 CH_cfa_226 2 2 0.0000757346
Chenopodium quinoa C_Quinoa_Scaffold_1762 1 CH_cqu_359 2 2 0.000142146
Erythranthe guttata scaffold_4 1 CH_egut_342 2 3 0.000218436
Helianthus annuus HanXRQChr09 1 CH_han_159 4 10 0.000000000545172
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_477 2 3 0.000462586
Populus trichocarpa Chr05 1 CH_ptr_302 2 2 0.0000578001
Quercus lobata 12 1 CH_qlo_352 3 4 0.0000000159933
Striga asiatica scaffold1 1 CH_sas_86 2 3 0.000187606
Salvia bowleyana GWHASIU00000008 1 CH_sbo_448 2 6 0.000682408
Salix brachista GWHAAZH00000005 1 CH_sbr_219 2 2 0.000063014
Schrenkiella parvula ch5-1 1 CH_spa_166 2 2 0.000078734
Selenicereus undatus Scaffold_33678 1 CH_sun_117 2 2 0.0000726639
Trochodendron aralioides group16 1 CH_tar_342 2 2 0.00018011
Tripterygium wilfordii NC_052246.1 1 CH_twi_213 2 2 0.000167252
Utricularia gibba unitig_0 1 CH_ugi_245 2 4 0.000440723
Vitis vinifera chrUn 1 CH_vvi_409 2 3 0.000684523
Acer truncatum chr5 2 CH_acertr_294 2 2 0.000070497
Arabidopsis lyrata scaffold_5 2 CH_aly_227 2 2 0.0000660044
Arabidopsis thaliana Chr3 2 CH_ath_217 2 2 0.0000286492
Corylus avellana 2 2 CH_cav_395 2 4 0.000459982
Coffea canephora chr1 2 CH_ccan_210 2 6 0.0000638831
Citrus clementina scaffold_3 2 CH_ccl_298 2 2 0.0000820311
Carpinus fangiana Cfa02 2 CH_cfa_226 2 2 0.0000757346
Chenopodium quinoa C_Quinoa_Scaffold_1762 2 CH_cqu_359 2 2 0.000142146
Erythranthe guttata scaffold_4 2 CH_egut_342 2 3 0.000218436
Helianthus annuus HanXRQChr09 2 CH_han_159 4 10 0.000000000545172
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_477 2 3 0.000462586
Populus trichocarpa Chr05 2 CH_ptr_302 2 2 0.0000578001
Quercus lobata 12 2 CH_qlo_352 3 4 0.0000000159933
Striga asiatica scaffold1 2 CH_sas_86 2 3 0.000187606
Salvia bowleyana GWHASIU00000008 2 CH_sbo_448 2 6 0.000682408
Salix brachista GWHAAZH00000005 2 CH_sbr_219 2 2 0.000063014
Schrenkiella parvula ch5-1 2 CH_spa_166 2 2 0.000078734
Selenicereus undatus Scaffold_33678 2 CH_sun_117 2 2 0.0000726639
Trochodendron aralioides group16 2 CH_tar_342 2 2 0.00018011
Tripterygium wilfordii NC_052246.1 2 CH_twi_213 2 2 0.000167252
Utricularia gibba unitig_0 2 CH_ugi_245 2 4 0.000440723
Vitis vinifera chrUn 2 CH_vvi_409 2 3 0.000684523

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001