Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.STE protein kinase superfamily.protein kinase (MAP3K-MEKK)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_435 | 3 | 17 | 0.000951784 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 1 | CH_can_216 | 3 | 3 | 0.0000116704 |
| Capsicum annuum | PGAv.1.6.scaffold198 | 1 | CH_can_46 | 6 | 9 | 0.000000000000281515 |
| Capsella rubella | scaffold_6 | 1 | CH_cru_208 | 3 | 3 | 0.00000914177 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 1 | CH_eca_211 | 3 | 3 | 0.00000534903 |
| Eucalyptus grandis | Chr09 | 1 | CH_egr_102 | 7 | 7 | 7.76324e-19 |
| Helianthus annuus | HanXRQChr11 | 1 | CH_han_553 | 3 | 5 | 0.000221061 |
| Medicago truncatula | chr5 | 1 | CH_mtr_356 | 4 | 12 | 0.000000751554 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_71 | 4 | 5 | 0.000000010702 |
| Simmondsia chinensis | GWHAASQ00000003 | 1 | CH_sci_102 | 3 | 3 | 0.00000395827 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_120 | 6 | 6 | 5.70532e-18 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_250 | 3 | 3 | 0.0000118856 |
| Solanum lycopersicum | SL4.0ch07 | 1 | CH_sly_53 | 6 | 8 | 0.0000000000000776634 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_216 | 3 | 3 | 0.00000771587 |
| Solanum pennellii | Spenn-ch07 | 1 | CH_spe_59 | 5 | 7 | 0.0000000000405225 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_292 | 3 | 3 | 0.00000697635 |
| Solanum tuberosum | ST4.03ch07 | 1 | CH_stu_91 | 5 | 7 | 0.000000000036524 |
| Zea mays | 3 | 1 | CH_zma_134 | 3 | 4 | 0.0000241483 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_435 | 3 | 17 | 0.000951784 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 2 | CH_can_216 | 3 | 3 | 0.0000116704 |
| Capsicum annuum | PGAv.1.6.scaffold198 | 2 | CH_can_46 | 6 | 9 | 0.000000000000281515 |
| Capsella rubella | scaffold_6 | 2 | CH_cru_208 | 3 | 3 | 0.00000914177 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 2 | CH_eca_211 | 3 | 3 | 0.00000534903 |
| Eucalyptus grandis | Chr09 | 2 | CH_egr_102 | 7 | 7 | 7.76324e-19 |
| Eucalyptus grandis | Chr07 | 2 | CH_egr_394 | 4 | 5 | 0.0000000266189 |
| Helianthus annuus | HanXRQChr11 | 2 | CH_han_553 | 3 | 5 | 0.000221061 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_71 | 4 | 5 | 0.000000010702 |
| Simmondsia chinensis | GWHAASQ00000003 | 2 | CH_sci_102 | 3 | 3 | 0.00000395827 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_120 | 6 | 6 | 5.70532e-18 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_250 | 3 | 3 | 0.0000118856 |
| Solanum lycopersicum | SL4.0ch07 | 2 | CH_sly_53 | 6 | 8 | 0.0000000000000776634 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_216 | 3 | 3 | 0.00000771587 |
| Solanum pennellii | Spenn-ch07 | 2 | CH_spe_59 | 5 | 7 | 0.0000000000405225 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_292 | 3 | 3 | 0.00000697635 |
| Solanum tuberosum | ST4.03ch07 | 2 | CH_stu_91 | 5 | 7 | 0.000000000036524 |
| Zea mays | 3 | 2 | CH_zma_134 | 3 | 4 | 0.0000241483 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |