Functional clusters

Information

  • Type MapMan
  • Description Protein modification.phosphorylation.TKL protein kinase superfamily.receptor-like protein kinase (RLCK-Os)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 1 CH_arhy_517 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 1 CH_arhy_677 2 3 0.000538871
Amborella trichopoda AmTr_v1.0_scaffold00019 1 CH_atr_48 4 12 0.000000000744338
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_187 2 2 0.0000827917
Camellia sinensis var. sinensis Chr14 1 CH_camsi_42 5 6 1.98975e-16
Cicer arietinum L. Ca_LG1_v3 1 CH_car_166 2 2 0.0000778301
Corylus avellana 11 1 CH_cav_272 2 2 0.0000766695
Citrus clementina scaffold_1 1 CH_ccl_119 3 3 0.0000000100941
Carya illinoinensis Chr07 1 CH_cil_195 3 3 0.0000000230519
Cucumis melo chr04 1 CH_cme_31 4 4 0.000000000000890758
Cucumis sativus L. chr3 1 CH_csa_38 4 4 0.00000000000174526
Durio zibethinus NW_019167882.1 1 CH_dzi_291 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_1 11 16 4.39855e-34
Gossypium hirsutum D05 1 CH_ghi_249 3 3 0.000000128337
Gossypium hirsutum D05 1 CH_ghi_250 3 3 0.000000128337
Glycine max Gm15 1 CH_gma_23 6 7 1.04231e-18
Glycine max Gm09 1 CH_gma_231 3 5 0.00000181486
Gossypium raimondii Chr09 1 CH_gra_114 3 3 0.0000000172451
Helianthus annuus HanXRQChr05 1 CH_han_127 4 5 0.0000000000605881
Lotus japonicus chr6 1 CH_lja_22 5 5 0.00000000000000117684
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_338 2 2 0.0000514007
Magnolia biondii Chr14 1 CH_mbi_214 3 9 0.00000118849
Manihot esculenta Chromosome06 1 CH_mes_295 2 2 0.0000610631
Medicago truncatula chr2 1 CH_mtr_67 5 8 0.00000000000000119692
Nelumbo nucifera chr1 1 CH_nnu_285 2 2 0.0000436015
Prunus persica Pp01 1 CH_ppe_91 4 5 0.0000000000311338
Pisum sativum chr1LG6 1 CH_psa_176 3 26 0.0000106059
Phaseolus vulgaris Chr09 1 CH_pvu_33 5 5 2.18605e-16
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_105 6 43 0.00000000000115217
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_625 3 18 0.000163134
Rhododendron simsii chr11 1 CH_rsi_137 4 14 0.00000000403287
Sechium edule LG13 1 CH_sed_340 2 2 0.000713419
Sechium edule LG05 1 CH_sed_97 3 4 0.000000305364
Sequoiadendron giganteum chr4 1 CH_sgi_30 12 37 7.97993e-29
Trochodendron aralioides group3 1 CH_tar_371 2 2 0.00018011
Theobroma cacao Chromosome_9 1 CH_tca_351 2 2 0.000219716
Tarenaya hassleriana NW_010966021.1 1 CH_tha_110 2 2 0.000069847
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_25 6 16 0.00000000000000124837
Vigna mungo CM024072.1 1 CH_vmu_24 4 4 0.000000000000809366
Zea mays 2 1 CH_zma_121 3 8 0.00000768263
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 2 CH_arhy_517 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 2 CH_arhy_677 2 3 0.000538871
Amborella trichopoda AmTr_v1.0_scaffold00019 2 CH_atr_48 4 12 0.000000000744338
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_187 2 2 0.0000827917
Camellia sinensis var. sinensis Chr14 2 CH_camsi_42 5 6 1.98975e-16
Cicer arietinum L. Ca_LG1_v3 2 CH_car_166 2 2 0.0000778301
Corylus avellana 11 2 CH_cav_272 2 2 0.0000766695
Citrus clementina scaffold_1 2 CH_ccl_119 3 3 0.0000000100941
Carya illinoinensis Chr07 2 CH_cil_195 3 3 0.0000000230519
Cucumis melo chr04 2 CH_cme_31 4 4 0.000000000000890758
Cucumis sativus L. chr3 2 CH_csa_38 4 4 0.00000000000174526
Durio zibethinus NW_019167882.1 2 CH_dzi_291 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_1 11 16 4.39855e-34
Eucalyptus grandis Chr03 2 CH_egr_379 3 4 0.0000000205528
Gossypium hirsutum D05 2 CH_ghi_249 3 3 0.000000128337
Gossypium hirsutum D05 2 CH_ghi_250 3 3 0.000000128337
Glycine max Gm15 2 CH_gma_23 6 7 1.04231e-18
Glycine max Gm09 2 CH_gma_231 3 5 0.00000181486
Gossypium raimondii Chr09 2 CH_gra_114 3 3 0.0000000172451
Helianthus annuus HanXRQChr05 2 CH_han_127 4 5 0.0000000000605881
Lotus japonicus chr6 2 CH_lja_22 5 5 0.00000000000000117684
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_338 2 2 0.0000514007
Magnolia biondii Chr14 2 CH_mbi_214 3 9 0.00000118849
Manihot esculenta Chromosome06 2 CH_mes_295 2 2 0.0000610631
Nelumbo nucifera chr1 2 CH_nnu_285 2 2 0.0000436015
Prunus persica Pp01 2 CH_ppe_91 4 5 0.0000000000311338
Pisum sativum chr1LG6 2 CH_psa_176 3 26 0.0000106059
Phaseolus vulgaris Chr09 2 CH_pvu_33 5 5 2.18605e-16
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_105 6 43 0.00000000000115217
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_625 3 18 0.000163134
Rhododendron simsii chr11 2 CH_rsi_137 4 14 0.00000000403287
Sechium edule LG13 2 CH_sed_340 2 2 0.000713419
Sechium edule LG05 2 CH_sed_97 3 4 0.000000305364
Sequoiadendron giganteum chr4 2 CH_sgi_30 12 37 7.97993e-29
Trochodendron aralioides group3 2 CH_tar_371 2 2 0.00018011
Theobroma cacao Chromosome_9 2 CH_tca_351 2 2 0.000219716
Tarenaya hassleriana NW_010966021.1 2 CH_tha_110 2 2 0.000069847
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_25 6 16 0.00000000000000124837
Vigna mungo CM024072.1 2 CH_vmu_24 4 4 0.000000000000809366
Zea mays 2 2 CH_zma_121 3 8 0.00000768263

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001