Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.TKL protein kinase superfamily.RLCK-IX receptor-like protein kinase families.receptor-like protein kinase (RLCK-IXb)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC03 | 1 | CH_bca_199 | 4 | 4 | 0.0000000284737 |
| Brassica carinata | ChrC06 | 1 | CH_bca_570 | 3 | 3 | 0.000039176 |
| Brassica carinata | ChrB07 | 1 | CH_bca_571 | 3 | 3 | 0.000039176 |
| Brassica napus | A10 | 1 | CH_bna_455 | 3 | 3 | 0.0000509892 |
| Brassica oleracea | C2 | 1 | CH_bol_315 | 3 | 5 | 0.000197577 |
| Brassica rapa | A10 | 1 | CH_bra_243 | 3 | 4 | 0.000136386 |
| Capsicum annuum | PGAv.1.6.scaffold480 | 1 | CH_can_203 | 3 | 4 | 0.00000675457 |
| Corylus avellana | 11 | 1 | CH_cav_104 | 4 | 10 | 0.0000000935648 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_48 | 5 | 9 | 0.0000000000143534 |
| Carya illinoinensis | Chr02 | 1 | CH_cil_106 | 5 | 5 | 0.00000000000372563 |
| Carya illinoinensis | Chr01 | 1 | CH_cil_376 | 3 | 5 | 0.000101961 |
| Eucalyptus grandis | Chr05 | 1 | CH_egr_47 | 9 | 10 | 3.27962e-25 |
| Erythranthe guttata | scaffold_6 | 1 | CH_egut_237 | 3 | 4 | 0.000011576 |
| Medicago truncatula | chr3 | 1 | CH_mtr_455 | 3 | 4 | 0.0000115435 |
| Nelumbo nucifera | chr6 | 1 | CH_nnu_134 | 3 | 3 | 0.00000232698 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_155 | 4 | 6 | 0.00000000307641 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_184 | 4 | 8 | 0.0000000143518 |
| Quercus lobata | 8 | 1 | CH_qlo_182 | 6 | 16 | 0.00000000000122374 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_444 | 3 | 5 | 0.0000230881 |
| Rhododendron simsii | chr06 | 1 | CH_rsi_120 | 6 | 26 | 0.00000000101552 |
| Rhododendron simsii | chr05 | 1 | CH_rsi_33 | 8 | 12 | 7.84744e-19 |
| Rhododendron simsii | chr07 | 1 | CH_rsi_470 | 3 | 6 | 0.000286853 |
| Salix brachista | GWHAAZH00000018 | 1 | CH_sbr_406 | 3 | 11 | 0.000799487 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_681 | 3 | 5 | 0.0000161894 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_94 | 8 | 16 | 1.69706e-20 |
| Theobroma cacao | Chromosome_1 | 1 | CH_tca_215 | 3 | 3 | 0.00000230119 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_191 | 3 | 4 | 0.0000233695 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_199 | 3 | 4 | 0.0000688628 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_37 | 6 | 8 | 0.000000000000236663 |
| Brassica carinata | ChrC03 | 2 | CH_bca_199 | 4 | 4 | 0.0000000284737 |
| Brassica carinata | ChrC06 | 2 | CH_bca_570 | 3 | 3 | 0.000039176 |
| Brassica carinata | ChrB07 | 2 | CH_bca_571 | 3 | 3 | 0.000039176 |
| Brassica oleracea | C2 | 2 | CH_bol_315 | 3 | 5 | 0.000197577 |
| Brassica rapa | A10 | 2 | CH_bra_243 | 3 | 4 | 0.000136386 |
| Capsicum annuum | PGAv.1.6.scaffold480 | 2 | CH_can_203 | 3 | 4 | 0.00000675457 |
| Corylus avellana | 11 | 2 | CH_cav_104 | 4 | 10 | 0.0000000935648 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_48 | 5 | 9 | 0.0000000000143534 |
| Carya illinoinensis | Chr02 | 2 | CH_cil_106 | 5 | 5 | 0.00000000000372563 |
| Carya illinoinensis | Chr01 | 2 | CH_cil_376 | 3 | 5 | 0.000101961 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_47 | 9 | 10 | 3.27962e-25 |
| Erythranthe guttata | scaffold_6 | 2 | CH_egut_237 | 3 | 4 | 0.000011576 |
| Nelumbo nucifera | chr6 | 2 | CH_nnu_134 | 3 | 3 | 0.00000232698 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_155 | 4 | 6 | 0.00000000307641 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_184 | 4 | 8 | 0.0000000143518 |
| Quercus lobata | 8 | 2 | CH_qlo_182 | 6 | 16 | 0.00000000000122374 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_444 | 3 | 5 | 0.0000230881 |
| Rhododendron simsii | chr06 | 2 | CH_rsi_120 | 6 | 26 | 0.00000000101552 |
| Rhododendron simsii | chr05 | 2 | CH_rsi_33 | 8 | 12 | 7.84744e-19 |
| Rhododendron simsii | chr07 | 2 | CH_rsi_470 | 3 | 6 | 0.000286853 |
| Salix brachista | GWHAAZH00000018 | 2 | CH_sbr_406 | 3 | 11 | 0.000799487 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_681 | 3 | 5 | 0.0000161894 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_94 | 8 | 16 | 1.69706e-20 |
| Theobroma cacao | Chromosome_1 | 2 | CH_tca_215 | 3 | 3 | 0.00000230119 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_191 | 3 | 4 | 0.0000233695 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_199 | 3 | 4 | 0.0000688628 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_37 | 6 | 8 | 0.000000000000236663 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |