Functional clusters

Information

  • Type MapMan
  • Description Protein modification.phosphorylation.TKL protein kinase superfamily.G-Lectin protein kinase families.protein kinase (SD-2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_34 5 6 0.0000000000130804
Camellia sinensis var. sinensis Chr4 1 CH_camsi_495 3 3 0.0000266076
Camellia sinensis var. sinensis Chr4 1 CH_camsi_589 3 4 0.000106364
Capsicum annuum PGAv.1.6.scaffold803 1 CH_can_379 3 11 0.000481736
Cicer arietinum L. Ca_LG1_v3 1 CH_car_101 3 3 0.00000617891
Coffea canephora chr11 1 CH_ccan_338 3 92 0.000617502
Coffea canephora chr5 1 CH_ccan_64 4 16 0.00000000739864
Citrus clementina scaffold_6 1 CH_ccl_177 4 9 0.000000806689
Carpinus fangiana Cfa02 1 CH_cfa_108 3 3 0.000000172079
Carya illinoinensis Chr16 1 CH_cil_17 12 17 6.90154e-27
Carya illinoinensis Chr08 1 CH_cil_248 4 5 0.000000756013
Carya illinoinensis Chr08 1 CH_cil_44 9 16 7.20618e-18
Cucumis melo chr04 1 CH_cme_111 3 3 0.0000011015
Cucumis sativus L. chr3 1 CH_csa_143 3 3 0.0000029895
Daucus carota DCARv2_Chr1 1 CH_dca_53 5 8 0.000000000182764
Durio zibethinus NW_019167937.1 1 CH_dzi_104 4 6 0.000000330322
Durio zibethinus NW_019167826.1 1 CH_dzi_180 3 3 0.0000271842
Durio zibethinus NW_019167827.1 1 CH_dzi_246 4 22 0.000159411
Durio zibethinus NW_019167949.1 1 CH_dzi_39 5 5 0.0000000000173753
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_45 6 12 0.00000000000277697
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_93 4 4 0.00000000852925
Fragaria x ananassa Fvb2-2 1 CH_fan_364 3 4 0.0000633634
Fragaria vesca Fvb2 1 CH_fve_125 4 6 0.0000000356347
Fragaria vesca Fvb6 1 CH_fve_168 4 10 0.000000498121
Glycine max Gm03 1 CH_gma_89 5 7 0.000000000244703
Helianthus annuus HanXRQChr12 1 CH_han_257 4 6 0.000000352075
Helianthus annuus HanXRQChr13 1 CH_han_718 4 31 0.000726853
Helianthus annuus HanXRQChr05 1 CH_han_93 7 25 0.00000000000477589
Hydrangea macrophylla Hma1.2p1_0240F.1 1 CH_hma_311 3 8 0.00012418
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_151 5 10 0.0000000160499
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_155 6 28 0.0000000243005
Magnolia biondii Chr18 1 CH_mbi_543 3 8 0.000350212
Malus domestica Chr15 1 CH_mdo_307 3 3 0.00000436589
Manihot esculenta Chromosome06 1 CH_mes_121 5 9 0.00000000128832
Medicago truncatula chr7 1 CH_mtr_282 4 6 0.0000000981195
Medicago truncatula chr3 1 CH_mtr_42 8 12 2.42787e-19
Nelumbo nucifera chr2 1 CH_nnu_132 4 11 0.00000167514
Nicotiana tabacum Nitab4.5_0000883 1 CH_nta_36 4 8 0.0000000914366
Oryza sativa ssp. japonica chr01 1 CH_osa_17 7 11 0.0000000000000046957
Oryza sativa ssp. japonica chr11 1 CH_osa_295 3 5 0.000298318
Oryza sativa ssp. japonica chr12 1 CH_osa_370 3 6 0.00059623
Petunia axillaris Peaxi162Scf00154 1 CH_pax_326 3 14 0.000592824
Punica granatum NC_045129.1 1 CH_pgr_183 3 3 0.0000276686
Punica granatum NC_045128.1 1 CH_pgr_29 7 16 0.000000000000189256
Prunus persica Pp01 1 CH_ppe_155 4 4 0.00000000911035
Prunus persica Pp06 1 CH_ppe_276 3 3 0.0000128547
Pisum sativum chr5LG3 1 CH_psa_182 3 4 0.0000158151
Populus trichocarpa Chr16 1 CH_ptr_172 4 5 0.0000000687596
Populus trichocarpa Chr19 1 CH_ptr_271 3 3 0.0000183118
Populus trichocarpa Chr13 1 CH_ptr_398 3 5 0.000182901
Phaseolus vulgaris Chr10 1 CH_pvu_72 5 6 0.0000000000557151
Quercus lobata CM012294 1 CH_qlo_117 8 17 0.00000000000000160219
Quercus lobata Scq3eQI_100 1 CH_qlo_409 5 14 0.000000129325
Quercus lobata 3 1 CH_qlo_843 3 4 0.00022676
Quercus lobata CM012294 1 CH_qlo_995 5 68 0.000641894
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_167 5 12 0.000000000636247
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_400 4 18 0.00000615122
Rhododendron simsii chr06 1 CH_rsi_131 6 18 0.00000000281448
Rhododendron simsii chr06 1 CH_rsi_191 5 13 0.000000159798
Rhododendron simsii chr11 1 CH_rsi_377 3 3 0.0000770883
Rhododendron simsii chr04 1 CH_rsi_64 7 13 0.000000000000312624
Salix brachista GWHAAZH00000013 1 CH_sbr_49 5 8 0.0000000000198724
Sequoiadendron giganteum chr2 1 CH_sgi_53 14 55 9.3952e-26
Sequoiadendron giganteum chr7 1 CH_sgi_976 3 3 0.0000540383
Solanum pennellii Spenn-ch07 1 CH_spe_58 5 8 0.0000000000191015
Solanum tuberosum ST4.03ch07 1 CH_stu_41 8 31 7.32018e-16
Theobroma cacao Chromosome_5 1 CH_tca_122 4 4 0.0000000125245
Tripterygium wilfordii NC_052244.1 1 CH_twi_71 4 4 0.00000000552431
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_182 3 4 0.0000148122
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_69 5 13 0.000000000923868
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_34 5 6 0.0000000000130804
Camellia sinensis var. sinensis Chr4 2 CH_camsi_495 3 3 0.0000266076
Camellia sinensis var. sinensis Chr4 2 CH_camsi_589 3 4 0.000106364
Capsicum annuum PGAv.1.6.scaffold803 2 CH_can_379 3 11 0.000481736
Cicer arietinum L. Ca_LG1_v3 2 CH_car_101 3 3 0.00000617891
Coffea canephora chr11 2 CH_ccan_338 3 92 0.000617502
Coffea canephora chr5 2 CH_ccan_64 4 16 0.00000000739864
Citrus clementina scaffold_6 2 CH_ccl_177 4 9 0.000000806689
Carpinus fangiana Cfa02 2 CH_cfa_108 3 3 0.000000172079
Carya illinoinensis Chr16 2 CH_cil_17 12 17 6.90154e-27
Carya illinoinensis Chr08 2 CH_cil_248 4 5 0.000000756013
Carya illinoinensis Chr08 2 CH_cil_44 9 16 7.20618e-18
Cucumis melo chr04 2 CH_cme_111 3 3 0.0000011015
Cucumis sativus L. chr3 2 CH_csa_143 3 3 0.0000029895
Daucus carota DCARv2_Chr1 2 CH_dca_53 5 8 0.000000000182764
Durio zibethinus NW_019167937.1 2 CH_dzi_104 4 6 0.000000330322
Durio zibethinus NW_019167826.1 2 CH_dzi_180 3 3 0.0000271842
Durio zibethinus NW_019167827.1 2 CH_dzi_246 4 22 0.000159411
Durio zibethinus NW_019167949.1 2 CH_dzi_39 5 5 0.0000000000173753
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_45 6 12 0.00000000000277697
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_93 4 4 0.00000000852925
Eucalyptus grandis Chr11 2 CH_egr_281 6 11 0.000000000205711
Eucalyptus grandis Chr06 2 CH_egr_294 6 12 0.000000000410905
Eucalyptus grandis Chr11 2 CH_egr_311 6 14 0.00000000133208
Eucalyptus grandis Chr06 2 CH_egr_478 5 12 0.000000240396
Eucalyptus grandis Chr06 2 CH_egr_740 3 3 0.000134804
Fragaria x ananassa Fvb2-2 2 CH_fan_364 3 4 0.0000633634
Fragaria vesca Fvb2 2 CH_fve_125 4 6 0.0000000356347
Fragaria vesca Fvb6 2 CH_fve_168 4 10 0.000000498121
Glycine max Gm03 2 CH_gma_89 5 7 0.000000000244703
Helianthus annuus HanXRQChr12 2 CH_han_257 4 6 0.000000352075
Helianthus annuus HanXRQChr13 2 CH_han_718 4 31 0.000726853
Helianthus annuus HanXRQChr05 2 CH_han_93 7 25 0.00000000000477589
Hydrangea macrophylla Hma1.2p1_0240F.1 2 CH_hma_311 3 8 0.00012418
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_151 5 10 0.0000000160499
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_155 6 28 0.0000000243005
Magnolia biondii Chr18 2 CH_mbi_543 3 8 0.000350212
Malus domestica Chr15 2 CH_mdo_307 3 3 0.00000436589
Manihot esculenta Chromosome06 2 CH_mes_121 5 9 0.00000000128832
Nelumbo nucifera chr2 2 CH_nnu_132 4 11 0.00000167514
Nicotiana tabacum Nitab4.5_0000883 2 CH_nta_36 4 8 0.0000000914366
Oryza sativa ssp. japonica chr01 2 CH_osa_17 7 11 0.0000000000000046957
Oryza sativa ssp. japonica chr11 2 CH_osa_295 3 5 0.000298318
Oryza sativa ssp. japonica chr12 2 CH_osa_370 3 6 0.00059623
Petunia axillaris Peaxi162Scf00154 2 CH_pax_326 3 14 0.000592824
Punica granatum NC_045129.1 2 CH_pgr_183 3 3 0.0000276686
Punica granatum NC_045128.1 2 CH_pgr_29 7 16 0.000000000000189256
Prunus persica Pp01 2 CH_ppe_155 4 4 0.00000000911035
Prunus persica Pp06 2 CH_ppe_276 3 3 0.0000128547
Pisum sativum chr5LG3 2 CH_psa_182 3 4 0.0000158151
Populus trichocarpa Chr16 2 CH_ptr_172 4 5 0.0000000687596
Populus trichocarpa Chr19 2 CH_ptr_271 3 3 0.0000183118
Populus trichocarpa Chr13 2 CH_ptr_398 3 5 0.000182901
Phaseolus vulgaris Chr10 2 CH_pvu_72 5 6 0.0000000000557151
Quercus lobata CM012294 2 CH_qlo_117 8 17 0.00000000000000160219
Quercus lobata Scq3eQI_100 2 CH_qlo_409 5 14 0.000000129325
Quercus lobata 3 2 CH_qlo_843 3 4 0.00022676
Quercus lobata CM012294 2 CH_qlo_995 5 68 0.000641894
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_167 5 12 0.000000000636247
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_400 4 18 0.00000615122
Rhododendron simsii chr06 2 CH_rsi_131 6 18 0.00000000281448
Rhododendron simsii chr06 2 CH_rsi_191 5 13 0.000000159798
Rhododendron simsii chr11 2 CH_rsi_377 3 3 0.0000770883
Rhododendron simsii chr04 2 CH_rsi_64 7 13 0.000000000000312624
Salix brachista GWHAAZH00000013 2 CH_sbr_49 5 8 0.0000000000198724
Sequoiadendron giganteum chr2 2 CH_sgi_53 14 55 9.3952e-26
Sequoiadendron giganteum chr7 2 CH_sgi_976 3 3 0.0000540383
Solanum pennellii Spenn-ch07 2 CH_spe_58 5 8 0.0000000000191015
Solanum tuberosum ST4.03ch07 2 CH_stu_41 8 31 7.32018e-16
Theobroma cacao Chromosome_5 2 CH_tca_122 4 4 0.0000000125245
Tripterygium wilfordii NC_052244.1 2 CH_twi_71 4 4 0.00000000552431
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_182 3 4 0.0000148122
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_69 5 13 0.000000000923868

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001