Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LysM)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 1 | CH_acertr_196 | 3 | 3 | 0.0000050694 |
| Amborella trichopoda | AmTr_v1.0_scaffold00022 | 1 | CH_atr_90 | 4 | 9 | 0.000000135292 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 1 | CH_bvu_60 | 4 | 4 | 0.0000000030989 |
| Camellia sinensis var. sinensis | Chr2 | 1 | CH_camsi_264 | 4 | 8 | 0.0000000979819 |
| Cannabis sativa | NC_044373.1 | 1 | CH_cansat_96 | 4 | 6 | 0.0000000173818 |
| Citrus clementina | scaffold_7 | 1 | CH_ccl_252 | 3 | 4 | 0.0000226007 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2646 | 1 | CH_cqu_102 | 4 | 4 | 0.00000000191012 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 1 | CH_cqu_256 | 3 | 3 | 0.00000447901 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2773 | 1 | CH_cqu_285 | 3 | 4 | 0.0000179099 |
| Davidia involucrata | GWHABJS00000004 | 1 | CH_din_239 | 3 | 5 | 0.000049865 |
| Fragaria x ananassa | Fvb1-3 | 1 | CH_fan_194 | 4 | 7 | 0.00000116148 |
| Fragaria x ananassa | Fvb1-2 | 1 | CH_fan_416 | 3 | 4 | 0.000181829 |
| Fragaria x ananassa | Fvb1-1 | 1 | CH_fan_417 | 3 | 4 | 0.000181829 |
| Fragaria vesca | Fvb1 | 1 | CH_fve_369 | 3 | 10 | 0.000226954 |
| Gossypium hirsutum | A11 | 1 | CH_ghi_396 | 3 | 3 | 0.00000639973 |
| Gossypium hirsutum | D11 | 1 | CH_ghi_397 | 3 | 3 | 0.00000639973 |
| Gossypium raimondii | Chr07 | 1 | CH_gra_196 | 3 | 3 | 0.00000417762 |
| Lonicera japonica | GWHAAZE00000007 | 1 | CH_lonja_245 | 3 | 3 | 0.000000887686 |
| Manihot esculenta | Chromosome13 | 1 | CH_mes_239 | 3 | 3 | 0.00000541984 |
| Prunus persica | Pp07 | 1 | CH_ppe_287 | 3 | 4 | 0.0000186903 |
| Pisum sativum | chr2LG1 | 1 | CH_psa_146 | 4 | 15 | 0.00000137893 |
| Populus trichocarpa | Chr05 | 1 | CH_ptr_283 | 3 | 4 | 0.0000308568 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_535 | 3 | 9 | 0.0000910039 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_340 | 4 | 5 | 0.000000000631272 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_619 | 3 | 3 | 0.00000199351 |
| Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_248 | 3 | 3 | 0.00000179234 |
| Trochodendron aralioides | group5 | 1 | CH_tar_67 | 4 | 4 | 0.00000000251648 |
| Tripterygium wilfordii | NC_052245.1 | 1 | CH_twi_137 | 3 | 3 | 0.00000531507 |
| Vigna mungo | CM024070.1 | 1 | CH_vmu_141 | 3 | 3 | 0.00000713945 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_99 | 3 | 5 | 0.00000687635 |
| Acer truncatum | chr3 | 2 | CH_acertr_196 | 3 | 3 | 0.0000050694 |
| Amborella trichopoda | AmTr_v1.0_scaffold00022 | 2 | CH_atr_90 | 4 | 9 | 0.000000135292 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 2 | CH_bvu_60 | 4 | 4 | 0.0000000030989 |
| Camellia sinensis var. sinensis | Chr2 | 2 | CH_camsi_264 | 4 | 8 | 0.0000000979819 |
| Cannabis sativa | NC_044373.1 | 2 | CH_cansat_96 | 4 | 6 | 0.0000000173818 |
| Citrus clementina | scaffold_7 | 2 | CH_ccl_252 | 3 | 4 | 0.0000226007 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2646 | 2 | CH_cqu_102 | 4 | 4 | 0.00000000191012 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 2 | CH_cqu_256 | 3 | 3 | 0.00000447901 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2773 | 2 | CH_cqu_285 | 3 | 4 | 0.0000179099 |
| Davidia involucrata | GWHABJS00000004 | 2 | CH_din_239 | 3 | 5 | 0.000049865 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_405 | 5 | 19 | 0.0000000342141 |
| Fragaria x ananassa | Fvb1-3 | 2 | CH_fan_194 | 4 | 7 | 0.00000116148 |
| Fragaria x ananassa | Fvb1-2 | 2 | CH_fan_416 | 3 | 4 | 0.000181829 |
| Fragaria x ananassa | Fvb1-1 | 2 | CH_fan_417 | 3 | 4 | 0.000181829 |
| Fragaria vesca | Fvb1 | 2 | CH_fve_369 | 3 | 10 | 0.000226954 |
| Gossypium hirsutum | A11 | 2 | CH_ghi_396 | 3 | 3 | 0.00000639973 |
| Gossypium hirsutum | D11 | 2 | CH_ghi_397 | 3 | 3 | 0.00000639973 |
| Gossypium raimondii | Chr07 | 2 | CH_gra_196 | 3 | 3 | 0.00000417762 |
| Lonicera japonica | GWHAAZE00000007 | 2 | CH_lonja_245 | 3 | 3 | 0.000000887686 |
| Manihot esculenta | Chromosome13 | 2 | CH_mes_239 | 3 | 3 | 0.00000541984 |
| Prunus persica | Pp07 | 2 | CH_ppe_287 | 3 | 4 | 0.0000186903 |
| Pisum sativum | chr2LG1 | 2 | CH_psa_146 | 4 | 15 | 0.00000137893 |
| Populus trichocarpa | Chr05 | 2 | CH_ptr_283 | 3 | 4 | 0.0000308568 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_535 | 3 | 9 | 0.0000910039 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_340 | 4 | 5 | 0.000000000631272 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_619 | 3 | 3 | 0.00000199351 |
| Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_248 | 3 | 3 | 0.00000179234 |
| Trochodendron aralioides | group5 | 2 | CH_tar_67 | 4 | 4 | 0.00000000251648 |
| Tripterygium wilfordii | NC_052245.1 | 2 | CH_twi_137 | 3 | 3 | 0.00000531507 |
| Vigna mungo | CM024070.1 | 2 | CH_vmu_141 | 3 | 3 | 0.00000713945 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_99 | 3 | 5 | 0.00000687635 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |