Functional clusters

Information

  • Type MapMan
  • Description Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRK10-1-like)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 1 CH_acertr_115 4 14 0.0000000367841
Aquilegia oxysepala CHR03 1 CH_aox_232 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_87 5 5 0.0000000000000700673
Brassica oleracea C6 1 CH_bol_147 3 4 0.00000141011
Brassica rapa A07 1 CH_bra_129 3 4 0.00000182444
Camellia sinensis var. sinensis Chr10 1 CH_camsi_128 5 8 0.0000000000624223
Camellia sinensis var. sinensis Chr6 1 CH_camsi_30 9 27 1.05594e-19
Camellia sinensis var. sinensis Chr15 1 CH_camsi_755 4 44 0.000342595
Capsicum annuum PGAv.1.6.scaffold610 1 CH_can_6 9 9 6.7722e-28
Cicer arietinum L. Ca_LG4_v3 1 CH_car_9 4 4 0.0000000000990177
Carpinus fangiana Cfa06 1 CH_cfa_70 4 6 0.000000000684072
Chenopodium quinoa C_Quinoa_Scaffold_1040 1 CH_cqu_261 3 4 0.00000612773
Davidia involucrata GWHABJS00000015 1 CH_din_451 2 3 0.000450094
Eucalyptus grandis Chr02 1 CH_egr_100 9 28 6.66336e-19
Fragaria x ananassa Fvb4-4 1 CH_fan_227 3 4 0.00000234163
Fragaria vesca Fvb4 1 CH_fve_456 2 2 0.000589102
Glycine max Gm20 1 CH_gma_34 6 8 3.97351e-16
Helianthus annuus HanXRQChr15 1 CH_han_198 4 6 0.0000000100603
Helianthus annuus HanXRQChr17 1 CH_han_320 3 3 0.00000217051
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_58 5 6 0.000000000000145121
Manihot esculenta Chromosome14 1 CH_mes_247 3 6 0.00000939189
Medicago truncatula chr1 1 CH_mtr_188 4 7 0.00000000152887
Petunia axillaris Peaxi162Scf00179 1 CH_pax_45 4 5 0.000000000658155
Pisum sativum chr1LG6 1 CH_psa_168 3 8 0.00000799586
Populus trichocarpa Chr04 1 CH_ptr_259 3 5 0.00000826551
Phaseolus vulgaris Chr07 1 CH_pvu_45 5 5 0.0000000000000550885
Quercus lobata 1 1 CH_qlo_268 4 4 0.000000000563593
Quercus lobata CM012294 1 CH_qlo_601 4 32 0.0000201237
Quercus lobata 1 1 CH_qlo_621 3 6 0.0000363574
Sequoiadendron giganteum chr4 1 CH_sgi_6 15 32 2.9673e-40
Sapria himalayana scaffold33_6547121 1 CH_shi_5 6 26 0.0000000000000885502
Solanum lycopersicum SL4.0ch05 1 CH_sly_14 8 8 9.73455e-25
Solanum pennellii Spenn-ch05 1 CH_spe_43 5 7 0.000000000000155332
Solanum tuberosum ST4.03ch03 1 CH_stu_257 3 3 0.00000267867
Solanum tuberosum ST4.03ch05 1 CH_stu_9 9 10 1.63968e-26
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_55 5 11 0.0000000000650291
Vigna mungo CM024071.1 1 CH_vmu_18 5 5 0.00000000000003295
Vitis vinifera chr1 1 CH_vvi_349 2 2 0.000228189
Acer truncatum chr11 2 CH_acertr_115 4 14 0.0000000367841
Aquilegia oxysepala CHR03 2 CH_aox_232 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_87 5 5 0.0000000000000700673
Brassica oleracea C6 2 CH_bol_147 3 4 0.00000141011
Brassica rapa A07 2 CH_bra_129 3 4 0.00000182444
Camellia sinensis var. sinensis Chr10 2 CH_camsi_128 5 8 0.0000000000624223
Camellia sinensis var. sinensis Chr6 2 CH_camsi_30 9 27 1.05594e-19
Camellia sinensis var. sinensis Chr15 2 CH_camsi_755 4 44 0.000342595
Capsicum annuum PGAv.1.6.scaffold610 2 CH_can_6 9 9 6.7722e-28
Cicer arietinum L. Ca_LG4_v3 2 CH_car_9 4 4 0.0000000000990177
Carpinus fangiana Cfa06 2 CH_cfa_70 4 6 0.000000000684072
Chenopodium quinoa C_Quinoa_Scaffold_1040 2 CH_cqu_261 3 4 0.00000612773
Davidia involucrata GWHABJS00000015 2 CH_din_451 2 3 0.000450094
Eucalyptus grandis Chr02 2 CH_egr_100 9 28 6.66336e-19
Eucalyptus grandis Chr07 2 CH_egr_296 6 28 0.000000000430362
Eucalyptus grandis Chr02 2 CH_egr_477 5 28 0.000000225487
Fragaria x ananassa Fvb4-4 2 CH_fan_227 3 4 0.00000234163
Fragaria vesca Fvb4 2 CH_fve_456 2 2 0.000589102
Glycine max Gm20 2 CH_gma_34 6 8 3.97351e-16
Helianthus annuus HanXRQChr15 2 CH_han_198 4 6 0.0000000100603
Helianthus annuus HanXRQChr17 2 CH_han_320 3 3 0.00000217051
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_58 5 6 0.000000000000145121
Manihot esculenta Chromosome14 2 CH_mes_247 3 6 0.00000939189
Petunia axillaris Peaxi162Scf00179 2 CH_pax_45 4 5 0.000000000658155
Pisum sativum chr1LG6 2 CH_psa_168 3 8 0.00000799586
Populus trichocarpa Chr04 2 CH_ptr_259 3 5 0.00000826551
Phaseolus vulgaris Chr07 2 CH_pvu_45 5 5 0.0000000000000550885
Quercus lobata 1 2 CH_qlo_268 4 4 0.000000000563593
Quercus lobata CM012294 2 CH_qlo_601 4 32 0.0000201237
Quercus lobata 1 2 CH_qlo_621 3 6 0.0000363574
Sequoiadendron giganteum chr4 2 CH_sgi_6 15 32 2.9673e-40
Sapria himalayana scaffold33_6547121 2 CH_shi_5 6 26 0.0000000000000885502
Solanum lycopersicum SL4.0ch05 2 CH_sly_14 8 8 9.73455e-25
Solanum pennellii Spenn-ch05 2 CH_spe_43 5 7 0.000000000000155332
Solanum tuberosum ST4.03ch03 2 CH_stu_257 3 3 0.00000267867
Solanum tuberosum ST4.03ch05 2 CH_stu_9 9 10 1.63968e-26
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_55 5 11 0.0000000000650291
Vigna mungo CM024071.1 2 CH_vmu_18 5 5 0.00000000000003295
Vitis vinifera chr1 2 CH_vvi_349 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001