Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (CrlRLK1)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group11 | 1 | CH_ach_2 | 8 | 15 | 3.05226e-18 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_92 | 4 | 8 | 0.0000000117454 |
| Camellia sinensis var. sinensis | Chr1 | 1 | CH_camsi_299 | 4 | 5 | 0.000000257769 |
| Coffea canephora | chr2 | 1 | CH_ccan_94 | 4 | 52 | 0.000000554646 |
| Carya illinoinensis | Chr01 | 1 | CH_cil_15 | 14 | 27 | 1.00988e-28 |
| Carya illinoinensis | Chr03 | 1 | CH_cil_20 | 13 | 30 | 4.83769e-25 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_214 | 3 | 4 | 0.0000145894 |
| Davidia involucrata | GWHABJS00000012 | 1 | CH_din_155 | 4 | 7 | 0.000000686462 |
| Davidia involucrata | GWHABJS00000018 | 1 | CH_din_177 | 4 | 9 | 0.00000246807 |
| Davidia involucrata | GWHABJS00000014 | 1 | CH_din_209 | 4 | 12 | 0.00000967725 |
| Davidia involucrata | GWHABJS00000018 | 1 | CH_din_30 | 8 | 36 | 0.000000000000166779 |
| Durio zibethinus | NW_019168049.1 | 1 | CH_dzi_395 | 3 | 6 | 0.000912453 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 1 | CH_eca_23 | 8 | 21 | 5.48861e-16 |
| Erythranthe guttata | scaffold_8 | 1 | CH_egut_177 | 4 | 6 | 0.000000304495 |
| Erythranthe guttata | scaffold_17 | 1 | CH_egut_178 | 4 | 6 | 0.000000304495 |
| Erythranthe guttata | scaffold_8 | 1 | CH_egut_249 | 3 | 3 | 0.0000232633 |
| Gossypium hirsutum | D11 | 1 | CH_ghi_295 | 4 | 5 | 0.000000524326 |
| Gossypium hirsutum | A11 | 1 | CH_ghi_334 | 4 | 6 | 0.00000157163 |
| Helianthus annuus | HanXRQChr15 | 1 | CH_han_142 | 6 | 11 | 0.000000000127607 |
| Helianthus annuus | HanXRQChr12 | 1 | CH_han_227 | 5 | 11 | 0.000000099958 |
| Helianthus annuus | HanXRQChr09 | 1 | CH_han_459 | 5 | 33 | 0.0000501415 |
| Helianthus annuus | HanXRQChr03 | 1 | CH_han_535 | 3 | 3 | 0.000128024 |
| Helianthus annuus | HanXRQChr10 | 1 | CH_han_668 | 4 | 18 | 0.00050718 |
| Lonicera japonica | GWHAAZE00000009 | 1 | CH_lonja_121 | 8 | 35 | 0.000000000624988 |
| Lonicera japonica | GWHAAZE00000003 | 1 | CH_lonja_219 | 5 | 9 | 0.000000309107 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 1 | CH_lsa_35 | 8 | 10 | 5.93515e-17 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 1 | CH_lsa_358 | 5 | 33 | 0.0000913886 |
| Medicago truncatula | chr4 | 1 | CH_mtr_166 | 5 | 7 | 0.000000000169035 |
| Oryza sativa ssp. japonica | chr05 | 1 | CH_osa_83 | 4 | 7 | 0.0000000367801 |
| Prunus persica | Pp03 | 1 | CH_ppe_73 | 6 | 9 | 0.000000000000586735 |
| Populus trichocarpa | Chr05 | 1 | CH_ptr_209 | 4 | 7 | 0.00000063678 |
| Phaseolus vulgaris | Chr04 | 1 | CH_pvu_14 | 10 | 16 | 3.26629e-22 |
| Quercus lobata | Scq3eQI_53 | 1 | CH_qlo_292 | 6 | 15 | 0.00000000148393 |
| Quercus lobata | 7 | 1 | CH_qlo_345 | 5 | 8 | 0.000000012454 |
| Quercus lobata | CM012294 | 1 | CH_qlo_546 | 6 | 50 | 0.00000452476 |
| Quercus lobata | 10 | 1 | CH_qlo_732 | 3 | 3 | 0.000116994 |
| Rhododendron simsii | chr10 | 1 | CH_rsi_16 | 15 | 30 | 5.96997e-31 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_24 | 13 | 38 | 1.48352e-23 |
| Rhododendron simsii | chr01 | 1 | CH_rsi_510 | 4 | 17 | 0.000434954 |
| Salvia bowleyana | GWHASIU00000001 | 1 | CH_sbo_79 | 5 | 8 | 0.000000000256131 |
| Salix brachista | GWHAAZH00000005 | 1 | CH_sbr_139 | 5 | 78 | 0.00000113774 |
| Sechium edule | LG06 | 1 | CH_sed_81 | 4 | 5 | 0.000000111451 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_62 | 9 | 13 | 1.56267e-24 |
| Solanum lycopersicum | SL4.0ch05 | 1 | CH_sly_380 | 3 | 6 | 0.00015895 |
| Theobroma cacao | Chromosome_1 | 1 | CH_tca_70 | 5 | 5 | 0.0000000000512249 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 1 | CH_tpr_176 | 3 | 3 | 0.00000979883 |
| Vitis vinifera | chr14 | 1 | CH_vvi_240 | 3 | 7 | 0.0000364159 |
| Actinidia chinensis | Lachesis_group11 | 2 | CH_ach_2 | 8 | 15 | 3.05226e-18 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_92 | 4 | 8 | 0.0000000117454 |
| Camellia sinensis var. sinensis | Chr1 | 2 | CH_camsi_299 | 4 | 5 | 0.000000257769 |
| Coffea canephora | chr2 | 2 | CH_ccan_94 | 4 | 52 | 0.000000554646 |
| Carya illinoinensis | Chr01 | 2 | CH_cil_15 | 14 | 27 | 1.00988e-28 |
| Carya illinoinensis | Chr03 | 2 | CH_cil_20 | 13 | 30 | 4.83769e-25 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_214 | 3 | 4 | 0.0000145894 |
| Davidia involucrata | GWHABJS00000012 | 2 | CH_din_155 | 4 | 7 | 0.000000686462 |
| Davidia involucrata | GWHABJS00000018 | 2 | CH_din_177 | 4 | 9 | 0.00000246807 |
| Davidia involucrata | GWHABJS00000014 | 2 | CH_din_209 | 4 | 12 | 0.00000967725 |
| Davidia involucrata | GWHABJS00000018 | 2 | CH_din_30 | 8 | 36 | 0.000000000000166779 |
| Durio zibethinus | NW_019168049.1 | 2 | CH_dzi_395 | 3 | 6 | 0.000912453 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 2 | CH_eca_23 | 8 | 21 | 5.48861e-16 |
| Erythranthe guttata | scaffold_8 | 2 | CH_egut_177 | 4 | 6 | 0.000000304495 |
| Erythranthe guttata | scaffold_17 | 2 | CH_egut_178 | 4 | 6 | 0.000000304495 |
| Erythranthe guttata | scaffold_8 | 2 | CH_egut_249 | 3 | 3 | 0.0000232633 |
| Gossypium hirsutum | D11 | 2 | CH_ghi_295 | 4 | 5 | 0.000000524326 |
| Gossypium hirsutum | A11 | 2 | CH_ghi_334 | 4 | 6 | 0.00000157163 |
| Gossypium hirsutum | D07 | 2 | CH_ghi_515 | 5 | 42 | 0.0000911491 |
| Helianthus annuus | HanXRQChr15 | 2 | CH_han_142 | 6 | 11 | 0.000000000127607 |
| Helianthus annuus | HanXRQChr12 | 2 | CH_han_227 | 5 | 11 | 0.000000099958 |
| Helianthus annuus | HanXRQChr09 | 2 | CH_han_459 | 5 | 33 | 0.0000501415 |
| Helianthus annuus | HanXRQChr03 | 2 | CH_han_535 | 3 | 3 | 0.000128024 |
| Helianthus annuus | HanXRQChr10 | 2 | CH_han_668 | 4 | 18 | 0.00050718 |
| Lonicera japonica | GWHAAZE00000009 | 2 | CH_lonja_121 | 8 | 35 | 0.000000000624988 |
| Lonicera japonica | GWHAAZE00000003 | 2 | CH_lonja_219 | 5 | 9 | 0.000000309107 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 2 | CH_lsa_35 | 8 | 10 | 5.93515e-17 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 2 | CH_lsa_358 | 5 | 33 | 0.0000913886 |
| Oryza sativa ssp. japonica | chr05 | 2 | CH_osa_83 | 4 | 7 | 0.0000000367801 |
| Prunus persica | Pp03 | 2 | CH_ppe_73 | 6 | 9 | 0.000000000000586735 |
| Populus trichocarpa | Chr05 | 2 | CH_ptr_209 | 4 | 7 | 0.00000063678 |
| Phaseolus vulgaris | Chr04 | 2 | CH_pvu_14 | 10 | 16 | 3.26629e-22 |
| Quercus lobata | Scq3eQI_53 | 2 | CH_qlo_292 | 6 | 15 | 0.00000000148393 |
| Quercus lobata | 7 | 2 | CH_qlo_345 | 5 | 8 | 0.000000012454 |
| Quercus lobata | CM012294 | 2 | CH_qlo_546 | 6 | 50 | 0.00000452476 |
| Quercus lobata | 10 | 2 | CH_qlo_732 | 3 | 3 | 0.000116994 |
| Rhododendron simsii | chr10 | 2 | CH_rsi_16 | 15 | 30 | 5.96997e-31 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_24 | 13 | 38 | 1.48352e-23 |
| Rhododendron simsii | chr01 | 2 | CH_rsi_510 | 4 | 17 | 0.000434954 |
| Salvia bowleyana | GWHASIU00000001 | 2 | CH_sbo_79 | 5 | 8 | 0.000000000256131 |
| Salix brachista | GWHAAZH00000005 | 2 | CH_sbr_139 | 5 | 78 | 0.00000113774 |
| Sechium edule | LG06 | 2 | CH_sed_81 | 4 | 5 | 0.000000111451 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_62 | 9 | 13 | 1.56267e-24 |
| Solanum lycopersicum | SL4.0ch05 | 2 | CH_sly_380 | 3 | 6 | 0.00015895 |
| Theobroma cacao | Chromosome_1 | 2 | CH_tca_70 | 5 | 5 | 0.0000000000512249 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 2 | CH_tpr_176 | 3 | 3 | 0.00000979883 |
| Vitis vinifera | chr14 | 2 | CH_vvi_240 | 3 | 7 | 0.0000364159 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |