Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRR-XV)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 1 | CH_amhyb_206 | 2 | 2 | 0.000252525 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 1 | CH_arhy_296 | 3 | 4 | 0.000001183 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 1 | CH_arhy_297 | 3 | 4 | 0.000001183 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_273 | 2 | 2 | 0.00049675 |
| Camellia sinensis var. sinensis | Chr14 | 1 | CH_camsi_341 | 3 | 4 | 0.000000706432 |
| Cicer arietinum L. | Ca_LG8_v3 | 1 | CH_car_58 | 3 | 3 | 0.000000508852 |
| Carya illinoinensis | Chr03 | 1 | CH_cil_141 | 4 | 4 | 0.000000000235771 |
| Carya illinoinensis | Chr04 | 1 | CH_cil_243 | 4 | 17 | 0.000000559644 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 1 | CH_cqu_244 | 3 | 5 | 0.00000282811 |
| Eucalyptus grandis | Chr03 | 1 | CH_egr_119 | 7 | 11 | 2.02998e-17 |
| Eucalyptus grandis | Chr03 | 1 | CH_egr_156 | 6 | 8 | 0.0000000000000053528 |
| Fragaria x ananassa | Fvb1-4 | 1 | CH_fan_311 | 3 | 9 | 0.0000196181 |
| Fragaria vesca | Fvb1 | 1 | CH_fve_239 | 3 | 10 | 0.0000218462 |
| Lupinus albus | Lalb_Chr14 | 1 | CH_lal_414 | 2 | 2 | 0.000787236 |
| Lotus japonicus | chr2 | 1 | CH_lja_137 | 3 | 3 | 0.000000268461 |
| Lonicera japonica | GWHAAZE00000004 | 1 | CH_lonja_133 | 4 | 8 | 0.00000000157818 |
| Malus domestica | Chr02 | 1 | CH_mdo_226 | 3 | 3 | 0.000000258848 |
| Manihot esculenta | Chromosome16 | 1 | CH_mes_243 | 3 | 5 | 0.00000670931 |
| Medicago truncatula | chr6 | 1 | CH_mtr_395 | 3 | 7 | 0.0000031009 |
| Prunus persica | Pp07 | 1 | CH_ppe_260 | 3 | 7 | 0.00000584022 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_307 | 3 | 21 | 0.000189644 |
| Populus trichocarpa | Chr18 | 1 | CH_ptr_249 | 3 | 5 | 0.00000420826 |
| Phaseolus vulgaris | Chr04 | 1 | CH_pvu_170 | 3 | 3 | 0.000000453468 |
| Quercus lobata | 12 | 1 | CH_qlo_1018 | 2 | 2 | 0.000774433 |
| Tarenaya hassleriana | NW_010968505.1 | 1 | CH_tha_213 | 2 | 2 | 0.00069847 |
| Vigna mungo | CM024077.1 | 1 | CH_vmu_110 | 3 | 3 | 0.00000035071 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 2 | CH_amhyb_206 | 2 | 2 | 0.000252525 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 2 | CH_arhy_296 | 3 | 4 | 0.000001183 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 2 | CH_arhy_297 | 3 | 4 | 0.000001183 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_273 | 2 | 2 | 0.00049675 |
| Camellia sinensis var. sinensis | Chr14 | 2 | CH_camsi_341 | 3 | 4 | 0.000000706432 |
| Cicer arietinum L. | Ca_LG8_v3 | 2 | CH_car_58 | 3 | 3 | 0.000000508852 |
| Carya illinoinensis | Chr03 | 2 | CH_cil_141 | 4 | 4 | 0.000000000235771 |
| Carya illinoinensis | Chr04 | 2 | CH_cil_243 | 4 | 17 | 0.000000559644 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 2 | CH_cqu_244 | 3 | 5 | 0.00000282811 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_119 | 7 | 11 | 2.02998e-17 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_156 | 6 | 8 | 0.0000000000000053528 |
| Fragaria x ananassa | Fvb1-4 | 2 | CH_fan_311 | 3 | 9 | 0.0000196181 |
| Fragaria vesca | Fvb1 | 2 | CH_fve_239 | 3 | 10 | 0.0000218462 |
| Lupinus albus | Lalb_Chr14 | 2 | CH_lal_414 | 2 | 2 | 0.000787236 |
| Lotus japonicus | chr2 | 2 | CH_lja_137 | 3 | 3 | 0.000000268461 |
| Lonicera japonica | GWHAAZE00000004 | 2 | CH_lonja_133 | 4 | 8 | 0.00000000157818 |
| Malus domestica | Chr02 | 2 | CH_mdo_226 | 3 | 3 | 0.000000258848 |
| Manihot esculenta | Chromosome16 | 2 | CH_mes_243 | 3 | 5 | 0.00000670931 |
| Prunus persica | Pp07 | 2 | CH_ppe_260 | 3 | 7 | 0.00000584022 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_307 | 3 | 21 | 0.000189644 |
| Populus trichocarpa | Chr18 | 2 | CH_ptr_249 | 3 | 5 | 0.00000420826 |
| Phaseolus vulgaris | Chr04 | 2 | CH_pvu_170 | 3 | 3 | 0.000000453468 |
| Quercus lobata | 12 | 2 | CH_qlo_1018 | 2 | 2 | 0.000774433 |
| Tarenaya hassleriana | NW_010968505.1 | 2 | CH_tha_213 | 2 | 2 | 0.00069847 |
| Vigna mungo | CM024077.1 | 2 | CH_vmu_110 | 3 | 3 | 0.00000035071 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |