Functional clusters

Information

  • Type MapMan
  • Description Protein modification.glycosylation.N-linked glycosylation.dolichol-phosphate biosynthesis.dehydro-dolichyl diphosphate synthase (DPS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-11 1 CH_aar_151 2 2 0.0000912326
Acer truncatum chr3 1 CH_acertr_292 2 2 0.000070497
Arabidopsis lyrata scaffold_8 1 CH_aly_107 3 3 0.0000000653509
Arabidopsis lyrata scaffold_4 1 CH_aly_410 2 2 0.000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 1 CH_amhyb_131 2 2 0.0000841751
Arabidopsis thaliana Chr5 1 CH_ath_28 4 4 0.000000000000352734
Brassica carinata ChrC04 1 CH_bca_490 3 9 0.0000126605
Brassica napus C09 1 CH_bna_385 3 8 0.0000131477
Brassica oleracea C9 1 CH_bol_171 3 8 0.00000502381
Brassica oleracea C2 1 CH_bol_429 2 2 0.000915212
Brassica rapa A02 1 CH_bra_82 3 3 0.0000000552942
Cardamine hirsuta Chr8 1 CH_chi_50 4 5 0.00000000000495383
Capsella rubella scaffold_8 1 CH_cru_55 4 4 0.0000000000175909
Eutrema salsugineum scaffold_2 1 CH_esa_70 3 3 0.0000000347941
Glycine max Gm14 1 CH_gma_372 2 2 0.000113867
Helianthus annuus HanXRQChr08 1 CH_han_502 2 2 0.000115929
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_159 3 5 0.0000000396294
Malus domestica Chr03 1 CH_mdo_379 2 2 0.0000379212
Medicago truncatula chr5 1 CH_mtr_227 3 4 0.0000000101285
Punica granatum NC_045134.1 1 CH_pgr_345 2 3 0.000675279
Papaver somniferum NW_020628818.1 1 CH_pso_134 4 5 0.000000000311904
Solanum lycopersicum SL4.0ch10 1 CH_sly_544 2 2 0.000880411
Schrenkiella parvula ch6-6 1 CH_spa_73 3 3 0.0000000371957
Solanum pennellii Spenn-ch10 1 CH_spe_501 2 2 0.000667186
Solanum pennellii Spenn-ch08 1 CH_spe_502 2 2 0.000667186
Solanum tuberosum ST4.03ch10 1 CH_stu_231 3 3 0.000000866628
Solanum tuberosum ST4.03ch06 1 CH_stu_240 4 22 0.00000145698
Tarenaya hassleriana NW_010968505.1 1 CH_tha_104 2 2 0.000069847
Aethionema arabicum LG-11 2 CH_aar_151 2 2 0.0000912326
Acer truncatum chr3 2 CH_acertr_292 2 2 0.000070497
Arabidopsis lyrata scaffold_8 2 CH_aly_107 3 3 0.0000000653509
Arabidopsis lyrata scaffold_4 2 CH_aly_410 2 2 0.000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 2 CH_amhyb_131 2 2 0.0000841751
Arabidopsis thaliana Chr5 2 CH_ath_28 4 4 0.000000000000352734
Brassica carinata ChrC04 2 CH_bca_490 3 9 0.0000126605
Brassica oleracea C9 2 CH_bol_171 3 8 0.00000502381
Brassica oleracea C2 2 CH_bol_429 2 2 0.000915212
Brassica rapa A02 2 CH_bra_82 3 3 0.0000000552942
Cardamine hirsuta Chr8 2 CH_chi_50 4 5 0.00000000000495383
Capsella rubella scaffold_8 2 CH_cru_55 4 4 0.0000000000175909
Eucalyptus grandis Chr10 2 CH_egr_672 2 2 0.0000585274
Eutrema salsugineum scaffold_2 2 CH_esa_70 3 3 0.0000000347941
Glycine max Gm14 2 CH_gma_372 2 2 0.000113867
Helianthus annuus HanXRQChr08 2 CH_han_502 2 2 0.000115929
Lotus japonicus Contig00155 2 CH_lja_261 2 2 0.0000715077
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_159 3 5 0.0000000396294
Malus domestica Chr03 2 CH_mdo_379 2 2 0.0000379212
Punica granatum NC_045134.1 2 CH_pgr_345 2 3 0.000675279
Papaver somniferum NW_020628818.1 2 CH_pso_134 4 5 0.000000000311904
Solanum lycopersicum SL4.0ch10 2 CH_sly_544 2 2 0.000880411
Schrenkiella parvula ch6-6 2 CH_spa_73 3 3 0.0000000371957
Solanum pennellii Spenn-ch10 2 CH_spe_501 2 2 0.000667186
Solanum pennellii Spenn-ch08 2 CH_spe_502 2 2 0.000667186
Solanum tuberosum ST4.03ch10 2 CH_stu_231 3 3 0.000000866628
Solanum tuberosum ST4.03ch06 2 CH_stu_240 4 22 0.00000145698
Tarenaya hassleriana NW_010968505.1 2 CH_tha_104 2 2 0.000069847

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001