Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.UtpC module.assembly factor (UTP22)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-3 1 CH_aar_55 3 3 0.0000000124856
Brassica napus A05 1 CH_bna_157 4 25 0.0000000169474
Capsicum annuum PGAv.1.6.scaffold358 1 CH_can_380 2 4 0.000495622
Hydrangea macrophylla Hma1.2p1_0789F.1 1 CH_hma_330 2 2 0.000333259
Sequoiadendron giganteum chr1 1 CH_sgi_717 2 2 0.0000487151
Sapria himalayana scaffold9_16683904 1 CH_shi_60 2 2 0.0000571804
Vanilla planifolia CM028153.1 1 CH_vpl_141 2 2 0.000073888
Aethionema arabicum LG-3 2 CH_aar_55 3 3 0.0000000124856
Capsicum annuum PGAv.1.6.scaffold358 2 CH_can_380 2 4 0.000495622
Hydrangea macrophylla Hma1.2p1_0789F.1 2 CH_hma_330 2 2 0.000333259
Sequoiadendron giganteum chr1 2 CH_sgi_717 2 2 0.0000487151
Sapria himalayana scaffold9_16683904 2 CH_shi_60 2 2 0.0000571804
Vanilla planifolia CM028153.1 2 CH_vpl_141 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001