Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS29

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata Contig1492 1 CH_bca_1156 2 2 0.000961939
Brassica carinata ChrB02 1 CH_bca_1157 2 2 0.000961939
Chenopodium quinoa C_Quinoa_Scaffold_1703 1 CH_cqu_488 2 2 0.000473821
Chenopodium quinoa C_Quinoa_Scaffold_1762 1 CH_cqu_489 2 2 0.000473821
Erythranthe guttata scaffold_2 1 CH_egut_424 2 2 0.000436888
Eutrema salsugineum scaffold_16 1 CH_esa_275 2 2 0.000456899
Malus domestica Chr15 1 CH_mdo_737 2 2 0.000796344
Manihot esculenta Chromosome18 1 CH_mes_410 2 2 0.000366379
Schrenkiella parvula ch5-2 1 CH_spa_254 2 2 0.000472404
Brassica carinata Contig1492 2 CH_bca_1156 2 2 0.000961939
Brassica carinata ChrB02 2 CH_bca_1157 2 2 0.000961939
Chenopodium quinoa C_Quinoa_Scaffold_1703 2 CH_cqu_488 2 2 0.000473821
Chenopodium quinoa C_Quinoa_Scaffold_1762 2 CH_cqu_489 2 2 0.000473821
Erythranthe guttata scaffold_2 2 CH_egut_424 2 2 0.000436888
Eutrema salsugineum scaffold_16 2 CH_esa_275 2 2 0.000456899
Malus domestica Chr15 2 CH_mdo_737 2 2 0.000796344
Manihot esculenta Chromosome18 2 CH_mes_410 2 2 0.000366379
Schrenkiella parvula ch5-2 2 CH_spa_254 2 2 0.000472404

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001