Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS28

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC06 1 CH_bca_1154 2 2 0.000961939
Brassica carinata ChrB07 1 CH_bca_1155 2 2 0.000961939
Cannabis sativa NC_044379.1 1 CH_cansat_289 2 2 0.000196993
Capsicum annuum PGAv.1.6.scaffold960 1 CH_can_338 2 2 0.000247831
Cucumis melo chr02 1 CH_cme_175 2 2 0.0000667111
Erythranthe guttata scaffold_13 1 CH_egut_223 3 6 0.00000556484
Lupinus albus Lalb_Chr25 1 CH_lal_300 2 2 0.000314895
Manihot esculenta Chromosome08 1 CH_mes_489 2 2 0.000915947
Manihot esculenta Chromosome10 1 CH_mes_490 2 2 0.000915947
Selenicereus undatus Scaffold_33680 1 CH_sun_112 2 2 0.0000726639
Brassica carinata ChrC06 2 CH_bca_1154 2 2 0.000961939
Brassica carinata ChrB07 2 CH_bca_1155 2 2 0.000961939
Cannabis sativa NC_044379.1 2 CH_cansat_289 2 2 0.000196993
Capsicum annuum PGAv.1.6.scaffold960 2 CH_can_338 2 2 0.000247831
Cucumis melo chr02 2 CH_cme_175 2 2 0.0000667111
Erythranthe guttata scaffold_13 2 CH_egut_223 3 6 0.00000556484
Lupinus albus Lalb_Chr25 2 CH_lal_300 2 2 0.000314895
Manihot esculenta Chromosome08 2 CH_mes_489 2 2 0.000915947
Manihot esculenta Chromosome10 2 CH_mes_490 2 2 0.000915947
Selenicereus undatus Scaffold_33680 2 CH_sun_112 2 2 0.0000726639

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001