Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS20

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-11 1 CH_aar_232 2 2 0.000547395
Arabidopsis lyrata scaffold_8 1 CH_aly_301 2 2 0.000198013
Camellia sinensis var. sinensis Chr7 1 CH_camsi_723 2 2 0.000275128
Camellia sinensis var. sinensis Chr1 1 CH_camsi_928 2 3 0.000825341
Coffea canephora chr2 1 CH_ccan_335 2 22 0.000579193
Cardamine hirsuta Chr8 1 CH_chi_294 2 2 0.000207361
Carya illinoinensis Chr03 1 CH_cil_529 2 2 0.000619828
Davidia involucrata GWHABJS00000004 1 CH_din_90 3 3 0.0000000150079
Quercus lobata 9 1 CH_qlo_314 3 3 0.00000000399842
Rhododendron simsii chr03 1 CH_rsi_527 2 3 0.000580745
Solanum lycopersicum SL4.0ch01 1 CH_sly_318 2 2 0.0000586941
Solanum pennellii Spenn-ch00 1 CH_spe_477 2 2 0.00044479
Solanum pennellii Spenn-ch01 1 CH_spe_478 2 2 0.00044479
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_317 2 2 0.000278772
Aethionema arabicum LG-11 2 CH_aar_232 2 2 0.000547395
Arabidopsis lyrata scaffold_8 2 CH_aly_301 2 2 0.000198013
Camellia sinensis var. sinensis Chr7 2 CH_camsi_723 2 2 0.000275128
Camellia sinensis var. sinensis Chr1 2 CH_camsi_928 2 3 0.000825341
Coffea canephora chr2 2 CH_ccan_335 2 22 0.000579193
Cardamine hirsuta Chr8 2 CH_chi_294 2 2 0.000207361
Carya illinoinensis Chr03 2 CH_cil_529 2 2 0.000619828
Davidia involucrata GWHABJS00000004 2 CH_din_90 3 3 0.0000000150079
Eucalyptus grandis Chr11 2 CH_egr_669 2 2 0.0000585274
Quercus lobata 9 2 CH_qlo_314 3 3 0.00000000399842
Rhododendron simsii chr03 2 CH_rsi_527 2 3 0.000580745
Solanum lycopersicum SL4.0ch01 2 CH_sly_318 2 2 0.0000586941
Solanum pennellii Spenn-ch00 2 CH_spe_477 2 2 0.00044479
Solanum pennellii Spenn-ch01 2 CH_spe_478 2 2 0.00044479
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_317 2 2 0.000278772

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001