Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS12

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB02 1 CH_bca_504 3 8 0.0000174555
Chenopodium quinoa C_Quinoa_Scaffold_1000 1 CH_cqu_416 2 2 0.000284293
Fragaria x ananassa Fvb1-4 1 CH_fan_618 2 2 0.000832663
Fragaria vesca Fvb1 1 CH_fve_428 2 3 0.000530165
Hydrangea macrophylla Hma1.2p1_0222F.1 1 CH_hma_340 2 2 0.000333259
Lotus japonicus chr3 1 CH_lja_143 3 5 0.000000306774
Malus domestica Chr15 1 CH_mdo_549 2 2 0.000227527
Olea europaea chr12 1 CH_oeu_229 2 2 0.000160137
Simmondsia chinensis GWHAASQ00000010 1 CH_sci_73 3 5 0.00000043491
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_316 2 2 0.000278772
Brassica carinata ChrB02 2 CH_bca_504 3 8 0.0000174555
Chenopodium quinoa C_Quinoa_Scaffold_1000 2 CH_cqu_416 2 2 0.000284293
Fragaria x ananassa Fvb1-4 2 CH_fan_618 2 2 0.000832663
Fragaria vesca Fvb1 2 CH_fve_428 2 3 0.000530165
Hydrangea macrophylla Hma1.2p1_0222F.1 2 CH_hma_340 2 2 0.000333259
Lotus japonicus chr3 2 CH_lja_143 3 5 0.000000306774
Malus domestica Chr15 2 CH_mdo_549 2 2 0.000227527
Olea europaea chr12 2 CH_oeu_229 2 2 0.000160137
Simmondsia chinensis GWHAASQ00000010 2 CH_sci_73 3 5 0.00000043491
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_316 2 2 0.000278772

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001