Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear export.ATP-dependent export factor (MDN1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 1 CH_aag_127 2 2 0.00024077
Acer truncatum chr1 1 CH_acertr_463 2 4 0.000422952
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_181 3 3 0.0000000053779
Amborella trichopoda AmTr_v1.0_scaffold00067 1 CH_atr_63 3 3 0.00000000946662
Brassica napus C02 1 CH_bna_61 4 7 0.0000000000100554
Brassica oleracea C2 1 CH_bol_81 3 6 0.0000000320505
Ceratophyllum demersum 10 1 CH_cde_78 2 2 0.0000789796
Carica papaya supercontig_30 1 CH_cpa_18 4 7 0.0000000000902123
Lupinus albus Lalb_Chr20 1 CH_lal_62 3 3 0.00000000413171
Nicotiana tabacum Nitab4.5_0000433 1 CH_nta_91 2 2 0.000109727
Sequoiadendron giganteum chr2 1 CH_sgi_437 3 4 0.000000014239
Sapria himalayana scaffold18_10761044 1 CH_shi_189 2 4 0.000343063
Schrenkiella parvula ch5-6 1 CH_spa_161 2 2 0.000078734
Selenicereus undatus Scaffold_19641 1 CH_sun_104 2 2 0.0000726639
Trochodendron aralioides group1 1 CH_tar_248 2 2 0.0000600366
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_81 3 3 0.0000000129529
Vigna mungo CM024077.1 1 CH_vmu_384 2 2 0.000646141
Anthoceros agrestis Sc2ySwM_117 2 CH_aag_127 2 2 0.00024077
Acer truncatum chr1 2 CH_acertr_463 2 4 0.000422952
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_181 3 3 0.0000000053779
Amborella trichopoda AmTr_v1.0_scaffold00067 2 CH_atr_63 3 3 0.00000000946662
Brassica oleracea C2 2 CH_bol_81 3 6 0.0000000320505
Ceratophyllum demersum 10 2 CH_cde_78 2 2 0.0000789796
Carica papaya supercontig_30 2 CH_cpa_18 4 7 0.0000000000902123
Lupinus albus Lalb_Chr20 2 CH_lal_62 3 3 0.00000000413171
Nicotiana tabacum Nitab4.5_0000433 2 CH_nta_91 2 2 0.000109727
Sequoiadendron giganteum chr2 2 CH_sgi_437 3 4 0.000000014239
Sapria himalayana scaffold18_10761044 2 CH_shi_189 2 4 0.000343063
Schrenkiella parvula ch5-6 2 CH_spa_161 2 2 0.000078734
Selenicereus undatus Scaffold_19641 2 CH_sun_104 2 2 0.0000726639
Trochodendron aralioides group1 2 CH_tar_248 2 2 0.0000600366
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_81 3 3 0.0000000129529
Vigna mungo CM024077.1 2 CH_vmu_384 2 2 0.000646141

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001