Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear assembly.PES-BOP1-WDR12 (PeBoW) complex.component BOP1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 1 CH_amhyb_191 2 2 0.000252525
Amborella trichopoda AmTr_v1.0_scaffold00024 1 CH_atr_283 2 2 0.000476644
Amborella trichopoda AmTr_v1.0_scaffold00007 1 CH_atr_284 2 2 0.000476644
Coffea canephora chr7 1 CH_ccan_152 2 3 0.0000127767
Lupinus albus Lalb_Chr21 1 CH_lal_179 2 2 0.0000524824
Lonicera japonica GWHAAZE00000008 1 CH_lonja_579 2 3 0.00053896
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_216 3 3 0.00000000953562
Salvia bowleyana GWHASIU00000004 1 CH_sbo_169 3 7 0.000000434654
Solanum pennellii Spenn-ch01 1 CH_spe_260 2 2 0.000044479
Vanilla planifolia CM028155.1 1 CH_vpl_139 2 2 0.000073888
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 2 CH_amhyb_191 2 2 0.000252525
Amborella trichopoda AmTr_v1.0_scaffold00024 2 CH_atr_283 2 2 0.000476644
Amborella trichopoda AmTr_v1.0_scaffold00007 2 CH_atr_284 2 2 0.000476644
Coffea canephora chr7 2 CH_ccan_152 2 3 0.0000127767
Lupinus albus Lalb_Chr21 2 CH_lal_179 2 2 0.0000524824
Lonicera japonica GWHAAZE00000008 2 CH_lonja_579 2 3 0.00053896
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_216 3 3 0.00000000953562
Salvia bowleyana GWHASIU00000004 2 CH_sbo_169 3 7 0.000000434654
Solanum pennellii Spenn-ch01 2 CH_spe_260 2 2 0.000044479
Vanilla planifolia CM028155.1 2 CH_vpl_139 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001