Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL7a

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Citrullus lanatus CG_Chr01 1 CH_cla_165 2 2 0.000266134
Cucumis melo chr09 1 CH_cme_228 2 2 0.000200133
Cucumis sativus L. chr5 1 CH_csa_253 2 2 0.000250428
Olea europaea chr17 1 CH_oeu_228 2 2 0.000160137
Populus trichocarpa Chr04 1 CH_ptr_491 2 2 0.000578001
Quercus lobata CM012294 1 CH_qlo_653 2 2 0.0000516289
Salix brachista GWHAAZH00000017 1 CH_sbr_375 2 2 0.00063014
Salix brachista GWHAAZH00000004 1 CH_sbr_376 2 2 0.00063014
Solanum lycopersicum SL4.0ch06 1 CH_sly_468 2 2 0.000352164
Solanum pennellii Spenn-ch06 1 CH_spe_476 2 2 0.00044479
Citrullus lanatus CG_Chr01 2 CH_cla_165 2 2 0.000266134
Cucumis melo chr09 2 CH_cme_228 2 2 0.000200133
Cucumis sativus L. chr5 2 CH_csa_253 2 2 0.000250428
Olea europaea chr17 2 CH_oeu_228 2 2 0.000160137
Populus trichocarpa Chr04 2 CH_ptr_491 2 2 0.000578001
Quercus lobata CM012294 2 CH_qlo_653 2 2 0.0000516289
Salix brachista GWHAAZH00000017 2 CH_sbr_375 2 2 0.00063014
Salix brachista GWHAAZH00000004 2 CH_sbr_376 2 2 0.00063014
Solanum lycopersicum SL4.0ch06 2 CH_sly_468 2 2 0.000352164
Solanum pennellii Spenn-ch06 2 CH_spe_476 2 2 0.00044479

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001