Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL6

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_2 1 CH_aly_394 2 3 0.000594007
Arabidopsis thaliana Chr1 1 CH_ath_327 2 3 0.000257837
Cardamine hirsuta Chr2 1 CH_chi_397 2 3 0.000622048
Eutrema salsugineum scaffold_9 1 CH_esa_304 2 3 0.000685305
Glycine max Gm05 1 CH_gma_554 2 2 0.000569336
Glycine max Gm08 1 CH_gma_555 2 2 0.000569336
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_475 2 3 0.000462586
Manihot esculenta Chromosome07 1 CH_mes_352 2 2 0.000183189
Olea europaea chr10 1 CH_oeu_401 2 2 0.000800683
Theobroma cacao Chromosome_5 1 CH_tca_305 3 44 0.000106403
Arabidopsis lyrata scaffold_2 2 CH_aly_394 2 3 0.000594007
Arabidopsis thaliana Chr1 2 CH_ath_327 2 3 0.000257837
Cardamine hirsuta Chr2 2 CH_chi_397 2 3 0.000622048
Eutrema salsugineum scaffold_9 2 CH_esa_304 2 3 0.000685305
Glycine max Gm05 2 CH_gma_554 2 2 0.000569336
Glycine max Gm08 2 CH_gma_555 2 2 0.000569336
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_475 2 3 0.000462586
Manihot esculenta Chromosome07 2 CH_mes_352 2 2 0.000183189
Olea europaea chr10 2 CH_oeu_401 2 2 0.000800683
Theobroma cacao Chromosome_5 2 CH_tca_305 3 44 0.000106403

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001