Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL17

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00013 1 CH_atr_40 5 21 0.0000000000277625
Capsicum annuum PGAv.1.6.scaffold352 1 CH_can_337 2 2 0.000247831
Cicer arietinum L. Ca_LG8_v3 1 CH_car_47 3 3 0.000000181733
Gossypium hirsutum A09 1 CH_ghi_328 3 5 0.00000128315
Nelumbo nucifera chr7 1 CH_nnu_300 3 28 0.0000932943
Papaver somniferum NC_039365.1 1 CH_pso_568 2 2 0.000337849
Solanum lycopersicum SL4.0ch06 1 CH_sly_402 2 2 0.000176082
Solanum pennellii Spenn-ch06 1 CH_spe_353 2 2 0.000133437
Vitis vinifera chr1 1 CH_vvi_331 2 2 0.000228189
Amborella trichopoda AmTr_v1.0_scaffold00013 2 CH_atr_40 5 21 0.0000000000277625
Capsicum annuum PGAv.1.6.scaffold352 2 CH_can_337 2 2 0.000247831
Cicer arietinum L. Ca_LG8_v3 2 CH_car_47 3 3 0.000000181733
Eucalyptus grandis Chr08 2 CH_egr_471 3 5 0.000000205513
Gossypium hirsutum A09 2 CH_ghi_328 3 5 0.00000128315
Nelumbo nucifera chr7 2 CH_nnu_300 3 28 0.0000932943
Papaver somniferum NC_039365.1 2 CH_pso_568 2 2 0.000337849
Solanum lycopersicum SL4.0ch06 2 CH_sly_402 2 2 0.000176082
Solanum pennellii Spenn-ch06 2 CH_spe_353 2 2 0.000133437
Vitis vinifera chr1 2 CH_vvi_331 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001