Functional clusters
Information
- Type MapMan
- Description RNA processing.mRNA silencing.transacting siRNA pathway.regulatory protein (CLSY3/4)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC05 | 1 | CH_bca_58 | 4 | 4 | 0.00000000000967062 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_186 | 2 | 2 | 0.0000827917 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1971 | 1 | CH_cqu_479 | 3 | 35 | 0.000439744 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1817 | 1 | CH_cqu_514 | 3 | 38 | 0.000566665 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_310 | 2 | 2 | 0.000191333 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 1 | CH_eca_397 | 2 | 2 | 0.000269233 |
| Erythranthe guttata | scaffold_2 | 1 | CH_egut_437 | 2 | 2 | 0.000436888 |
| Fragaria vesca | Fvb5 | 1 | CH_fve_349 | 2 | 2 | 0.00017673 |
| Helianthus annuus | HanXRQChr14 | 1 | CH_han_92 | 4 | 5 | 0.00000000000432792 |
| Medicago truncatula | chr7 | 1 | CH_mtr_146 | 5 | 23 | 0.0000000000402255 |
| Olea europaea | chr15 | 1 | CH_oeu_52 | 3 | 3 | 0.0000000170963 |
| Phaseolus vulgaris | Chr08 | 1 | CH_pvu_443 | 2 | 3 | 0.000661214 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_600 | 2 | 2 | 0.000119596 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_111 | 4 | 5 | 0.00000000100079 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_359 | 3 | 9 | 0.0000715352 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_83 | 4 | 6 | 0.000000000831409 |
| Solanum tuberosum | ST4.03ch08 | 1 | CH_stu_259 | 3 | 6 | 0.0000027566 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 1 | CH_tpr_87 | 3 | 3 | 0.0000000859546 |
| Brassica carinata | ChrC05 | 2 | CH_bca_58 | 4 | 4 | 0.00000000000967062 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_186 | 2 | 2 | 0.0000827917 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1971 | 2 | CH_cqu_479 | 3 | 35 | 0.000439744 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1817 | 2 | CH_cqu_514 | 3 | 38 | 0.000566665 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_310 | 2 | 2 | 0.000191333 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 2 | CH_eca_397 | 2 | 2 | 0.000269233 |
| Erythranthe guttata | scaffold_2 | 2 | CH_egut_437 | 2 | 2 | 0.000436888 |
| Fragaria vesca | Fvb5 | 2 | CH_fve_349 | 2 | 2 | 0.00017673 |
| Helianthus annuus | HanXRQChr14 | 2 | CH_han_92 | 4 | 5 | 0.00000000000432792 |
| Olea europaea | chr15 | 2 | CH_oeu_52 | 3 | 3 | 0.0000000170963 |
| Phaseolus vulgaris | Chr08 | 2 | CH_pvu_443 | 2 | 3 | 0.000661214 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_600 | 2 | 2 | 0.000119596 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_111 | 4 | 5 | 0.00000000100079 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_359 | 3 | 9 | 0.0000715352 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_83 | 4 | 6 | 0.000000000831409 |
| Solanum tuberosum | ST4.03ch08 | 2 | CH_stu_259 | 3 | 6 | 0.0000027566 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 2 | CH_tpr_87 | 3 | 3 | 0.0000000859546 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |