Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B3

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 1 CH_aly_282 2 3 0.000198007
Arabidopsis thaliana Chr3 1 CH_ath_254 2 3 0.0000859463
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_697 2 3 0.000358775
Rhododendron simsii chr09 1 CH_rsi_401 2 3 0.000193586
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_209 2 2 0.0000756974
Vanilla planifolia CM028157.1 1 CH_vpl_148 2 2 0.000073888
Zea mays 3 1 CH_zma_56 3 3 0.0000000156868
Arabidopsis lyrata scaffold_5 2 CH_aly_282 2 3 0.000198007
Arabidopsis thaliana Chr3 2 CH_ath_254 2 3 0.0000859463
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_697 2 3 0.000358775
Rhododendron simsii chr09 2 CH_rsi_401 2 3 0.000193586
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_209 2 2 0.0000756974
Vanilla planifolia CM028157.1 2 CH_vpl_148 2 2 0.000073888
Zea mays 3 2 CH_zma_56 3 3 0.0000000156868

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001