Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP39)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr11 1 CH_camsi_213 3 3 0.0000000126162
Coffea canephora chr1 1 CH_ccan_289 2 7 0.000268306
Ceratophyllum demersum 3 1 CH_cde_214 2 2 0.000473878
Daucus carota DCARv2_Chr1 1 CH_dca_192 3 16 0.0000136576
Lupinus albus Lalb_Chr01 1 CH_lal_345 2 2 0.000524824
Lupinus albus Lalb_Chr20 1 CH_lal_346 2 2 0.000524824
Quercus lobata 9 1 CH_qlo_638 2 2 0.0000516289
Sequoiadendron giganteum chr8 1 CH_sgi_1059 2 2 0.000146145
Vitis vinifera chr7 1 CH_vvi_134 3 3 0.0000000347148
Camellia sinensis var. sinensis Chr11 2 CH_camsi_213 3 3 0.0000000126162
Coffea canephora chr1 2 CH_ccan_289 2 7 0.000268306
Ceratophyllum demersum 3 2 CH_cde_214 2 2 0.000473878
Daucus carota DCARv2_Chr1 2 CH_dca_192 3 16 0.0000136576
Lupinus albus Lalb_Chr01 2 CH_lal_345 2 2 0.000524824
Lupinus albus Lalb_Chr20 2 CH_lal_346 2 2 0.000524824
Quercus lobata 9 2 CH_qlo_638 2 2 0.0000516289
Sequoiadendron giganteum chr8 2 CH_sgi_1059 2 2 0.000146145
Vitis vinifera chr7 2 CH_vvi_134 3 3 0.0000000347148

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001