Functional clusters

Information

  • Type MapMan
  • Description RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial RNA processing factor (SVR7)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 1 CH_arhy_515 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 1 CH_arhy_516 2 2 0.00017963
Cicer arietinum L. Ca_LG1_v3 1 CH_car_232 2 2 0.00023349
Glycine max Gm15 1 CH_gma_171 3 3 0.000000181524
Glycine max Gm09 1 CH_gma_69 4 4 0.0000000000206703
Medicago truncatula chr2 1 CH_mtr_623 2 2 0.000123259
Olea europaea chr7 1 CH_oeu_176 2 2 0.0000533789
Pisum sativum chr1LG6 1 CH_psa_100 3 4 0.0000000653034
Phaseolus vulgaris Chr06 1 CH_pvu_362 2 2 0.000220418
Trifolium pratense Tp57577_TGAC_v2_scaf_215 1 CH_tpr_74 3 4 0.0000000343805
Vigna mungo CM024075.1 1 CH_vmu_75 3 3 0.0000000250507
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 2 CH_arhy_515 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 2 CH_arhy_516 2 2 0.00017963
Cicer arietinum L. Ca_LG1_v3 2 CH_car_232 2 2 0.00023349
Glycine max Gm15 2 CH_gma_171 3 3 0.000000181524
Glycine max Gm09 2 CH_gma_69 4 4 0.0000000000206703
Lotus japonicus chr6 2 CH_lja_325 2 2 0.000214523
Olea europaea chr7 2 CH_oeu_176 2 2 0.0000533789
Pisum sativum chr1LG6 2 CH_psa_100 3 4 0.0000000653034
Phaseolus vulgaris Chr06 2 CH_pvu_362 2 2 0.000220418
Trifolium pratense Tp57577_TGAC_v2_scaf_215 2 CH_tpr_74 3 4 0.0000000343805
Vigna mungo CM024075.1 2 CH_vmu_75 3 3 0.0000000250507

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001