Functional clusters
Information
- Type MapMan
- Description Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment.cohesin cofactor (PDS5)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 1 | CH_acertr_130 | 4 | 17 | 0.0000000874273 |
| Camellia sinensis var. sinensis | Chr14 | 1 | CH_camsi_168 | 5 | 36 | 0.00000000135246 |
| Erythranthe guttata | scaffold_4 | 1 | CH_egut_191 | 4 | 14 | 0.000000572392 |
| Glycine max | Gm06 | 1 | CH_gma_203 | 3 | 3 | 0.000000786602 |
| Lupinus albus | Lalb_Chr18 | 1 | CH_lal_116 | 3 | 3 | 0.00000150394 |
| Lonicera japonica | GWHAAZE00000009 | 1 | CH_lonja_530 | 2 | 2 | 0.000359324 |
| Petunia axillaris | Peaxi162Scf00332 | 1 | CH_pax_301 | 2 | 2 | 0.000422134 |
| Punica granatum | NC_045134.1 | 1 | CH_pgr_359 | 2 | 2 | 0.000750356 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_147 | 3 | 5 | 0.00000142828 |
| Phaseolus vulgaris | Chr09 | 1 | CH_pvu_152 | 3 | 3 | 0.000000283418 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_275 | 3 | 11 | 0.0000298151 |
| Solanum pennellii | Spenn-ch03 | 1 | CH_spe_86 | 4 | 7 | 0.00000000116389 |
| Tripterygium wilfordii | NC_052241.1 | 1 | CH_twi_125 | 3 | 4 | 0.00000307654 |
| Vigna mungo | CM024072.1 | 1 | CH_vmu_419 | 2 | 2 | 0.000969211 |
| Acer truncatum | chr13 | 2 | CH_acertr_130 | 4 | 17 | 0.0000000874273 |
| Camellia sinensis var. sinensis | Chr14 | 2 | CH_camsi_168 | 5 | 36 | 0.00000000135246 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_556 | 3 | 6 | 0.00000359558 |
| Erythranthe guttata | scaffold_4 | 2 | CH_egut_191 | 4 | 14 | 0.000000572392 |
| Glycine max | Gm06 | 2 | CH_gma_203 | 3 | 3 | 0.000000786602 |
| Lupinus albus | Lalb_Chr18 | 2 | CH_lal_116 | 3 | 3 | 0.00000150394 |
| Lotus japonicus | chr3 | 2 | CH_lja_208 | 3 | 5 | 0.00000644053 |
| Lonicera japonica | GWHAAZE00000009 | 2 | CH_lonja_530 | 2 | 2 | 0.000359324 |
| Petunia axillaris | Peaxi162Scf00332 | 2 | CH_pax_301 | 2 | 2 | 0.000422134 |
| Punica granatum | NC_045134.1 | 2 | CH_pgr_359 | 2 | 2 | 0.000750356 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_147 | 3 | 5 | 0.00000142828 |
| Phaseolus vulgaris | Chr09 | 2 | CH_pvu_152 | 3 | 3 | 0.000000283418 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_275 | 3 | 11 | 0.0000298151 |
| Solanum pennellii | Spenn-ch03 | 2 | CH_spe_86 | 4 | 7 | 0.00000000116389 |
| Tripterygium wilfordii | NC_052241.1 | 2 | CH_twi_125 | 3 | 4 | 0.00000307654 |
| Vigna mungo | CM024072.1 | 2 | CH_vmu_419 | 2 | 2 | 0.000969211 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |