Functional clusters

Information

  • Type MapMan
  • Description Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.platform subcomplex.component APC4

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_7 1 CH_aly_281 2 3 0.000198007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_547 2 3 0.000269438
Brassica carinata ChrC09 1 CH_bca_250 3 6 0.000000137076
Brassica carinata Contig959 1 CH_bca_770 2 2 0.000213764
Cicer arietinum L. Ca_LG6_v3 1 CH_car_136 2 2 0.0000778301
Sequoiadendron giganteum chr5 1 CH_sgi_714 2 2 0.0000487151
Sapria himalayana scaffold3_21451142 1 CH_shi_188 2 4 0.000343063
Selenicereus undatus Scaffold_3410 1 CH_sun_102 2 2 0.0000726639
Utricularia gibba unitig_8 1 CH_ugi_115 2 2 0.0000734592
Vitis vinifera chrUn 1 CH_vvi_310 2 3 0.00022818
Arabidopsis lyrata scaffold_7 2 CH_aly_281 2 3 0.000198007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_547 2 3 0.000269438
Brassica carinata ChrC09 2 CH_bca_250 3 6 0.000000137076
Brassica carinata Contig959 2 CH_bca_770 2 2 0.000213764
Cicer arietinum L. Ca_LG6_v3 2 CH_car_136 2 2 0.0000778301
Eucalyptus grandis Chr05 2 CH_egr_606 3 7 0.000015097
Eucalyptus grandis Chr03 2 CH_egr_860 3 19 0.000417165
Sequoiadendron giganteum chr5 2 CH_sgi_714 2 2 0.0000487151
Sapria himalayana scaffold3_21451142 2 CH_shi_188 2 4 0.000343063
Selenicereus undatus Scaffold_3410 2 CH_sun_102 2 2 0.0000726639
Utricularia gibba unitig_8 2 CH_ugi_115 2 2 0.0000734592
Vitis vinifera chrUn 2 CH_vvi_310 2 3 0.00022818

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001