Functional clusters
Information
- Type MapMan
- Description Cell cycle organisation.cell cycle control.cyclin-dependent regulation.cyclin activities.cyclin (CYCA)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 1 | CH_acertr_549 | 2 | 2 | 0.00070497 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_187 | 3 | 5 | 0.00000783887 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_138 | 3 | 3 | 0.000000147742 |
| Cannabis sativa | NC_044377.1 | 1 | CH_cansat_396 | 2 | 2 | 0.000984963 |
| Carpinus fangiana | Cfa07 | 1 | CH_cfa_113 | 5 | 77 | 0.000000270467 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4087 | 1 | CH_cqu_605 | 2 | 2 | 0.000995025 |
| Capsella rubella | scaffold_1 | 1 | CH_cru_74 | 4 | 4 | 0.000000000386999 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 1 | CH_eca_209 | 3 | 5 | 0.000004982 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_164 | 3 | 3 | 0.000000437284 |
| Glycine max | Gm04 | 1 | CH_gma_224 | 3 | 3 | 0.00000146948 |
| Medicago truncatula | chr3 | 1 | CH_mtr_83 | 5 | 5 | 0.0000000000000098752 |
| Physcomitrium patens | Chr02 | 1 | CH_ppa_31 | 4 | 14 | 0.000000144825 |
| Physcomitrium patens | Chr01 | 1 | CH_ppa_38 | 4 | 19 | 0.000000560281 |
| Pisum sativum | chr5LG3 | 1 | CH_psa_189 | 3 | 9 | 0.0000191858 |
| Phaseolus vulgaris | Chr09 | 1 | CH_pvu_179 | 3 | 3 | 0.000000971718 |
| Quercus lobata | CM012294 | 1 | CH_qlo_525 | 3 | 4 | 0.00000191893 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_343 | 3 | 4 | 0.00000114413 |
| Solanum lycopersicum | SL4.0ch12 | 1 | CH_sly_117 | 4 | 7 | 0.00000000267417 |
| Solanum pennellii | Spenn-ch12 | 1 | CH_spe_80 | 4 | 6 | 0.000000000498863 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 1 | CH_tpr_38 | 4 | 6 | 0.000000000683062 |
| Vigna mungo | CM024072.1 | 1 | CH_vmu_117 | 3 | 3 | 0.000000751521 |
| Acer truncatum | chr13 | 2 | CH_acertr_549 | 2 | 2 | 0.00070497 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_187 | 3 | 5 | 0.00000783887 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_138 | 3 | 3 | 0.000000147742 |
| Cannabis sativa | NC_044377.1 | 2 | CH_cansat_396 | 2 | 2 | 0.000984963 |
| Carpinus fangiana | Cfa07 | 2 | CH_cfa_113 | 5 | 77 | 0.000000270467 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4087 | 2 | CH_cqu_605 | 2 | 2 | 0.000995025 |
| Capsella rubella | scaffold_1 | 2 | CH_cru_74 | 4 | 4 | 0.000000000386999 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 2 | CH_eca_209 | 3 | 5 | 0.000004982 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_164 | 3 | 3 | 0.000000437284 |
| Glycine max | Gm04 | 2 | CH_gma_224 | 3 | 3 | 0.00000146948 |
| Physcomitrium patens | Chr02 | 2 | CH_ppa_31 | 4 | 14 | 0.000000144825 |
| Physcomitrium patens | Chr01 | 2 | CH_ppa_38 | 4 | 19 | 0.000000560281 |
| Pisum sativum | chr5LG3 | 2 | CH_psa_189 | 3 | 9 | 0.0000191858 |
| Phaseolus vulgaris | Chr09 | 2 | CH_pvu_179 | 3 | 3 | 0.000000971718 |
| Quercus lobata | CM012294 | 2 | CH_qlo_525 | 3 | 4 | 0.00000191893 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_343 | 3 | 4 | 0.00000114413 |
| Solanum lycopersicum | SL4.0ch12 | 2 | CH_sly_117 | 4 | 7 | 0.00000000267417 |
| Solanum pennellii | Spenn-ch12 | 2 | CH_spe_80 | 4 | 6 | 0.000000000498863 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 2 | CH_tpr_38 | 4 | 6 | 0.000000000683062 |
| Vigna mungo | CM024072.1 | 2 | CH_vmu_117 | 3 | 3 | 0.000000751521 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |