Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.plant-specific components.component DSSP-related

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-3 1 CH_aar_229 2 2 0.000547395
Arabidopsis lyrata scaffold_6 1 CH_aly_157 3 5 0.00000130674
Arabidopsis lyrata scaffold_5 1 CH_aly_183 3 7 0.0000045726
Arabidopsis thaliana Chr5 1 CH_ath_117 3 5 0.0000000492448
Brassica carinata ChrB01 1 CH_bca_1151 2 2 0.000961939
Cardamine hirsuta Chr6 1 CH_chi_133 3 5 0.000000286633
Olea europaea chr10 1 CH_oeu_399 2 2 0.000800683
Salix brachista GWHAAZH00000015 1 CH_sbr_358 2 3 0.000567096
Aethionema arabicum LG-3 2 CH_aar_229 2 2 0.000547395
Arabidopsis lyrata scaffold_6 2 CH_aly_157 3 5 0.00000130674
Arabidopsis lyrata scaffold_5 2 CH_aly_183 3 7 0.0000045726
Arabidopsis thaliana Chr5 2 CH_ath_117 3 5 0.0000000492448
Brassica carinata ChrB01 2 CH_bca_1151 2 2 0.000961939
Cardamine hirsuta Chr6 2 CH_chi_133 3 5 0.000000286633
Eucalyptus grandis Chr11 2 CH_egr_665 2 2 0.0000585274
Olea europaea chr10 2 CH_oeu_399 2 2 0.000800683
Salix brachista GWHAAZH00000015 2 CH_sbr_358 2 3 0.000567096

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001