Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 1 | CH_aar_43 | 4 | 4 | 0.000000000287079 |
| Actinidia chinensis | Lachesis_group3 | 1 | CH_ach_51 | 3 | 3 | 0.00000126593 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 1 | CH_amhyb_67 | 3 | 3 | 0.0000023383 |
| Brassica carinata | ChrB01 | 1 | CH_bca_290 | 5 | 53 | 0.000000292843 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 1 | CH_bvu_105 | 3 | 3 | 0.000000575799 |
| Camellia sinensis var. sinensis | Chr1 | 1 | CH_camsi_52 | 6 | 10 | 0.00000000000000287518 |
| Cicer arietinum L. | Ca_LG4_v3 | 1 | CH_car_112 | 3 | 5 | 0.0000149848 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4365 | 1 | CH_cqu_118 | 4 | 6 | 0.0000000113875 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 1 | CH_eca_114 | 4 | 7 | 0.0000000290079 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 1 | CH_eca_297 | 3 | 6 | 0.0000492514 |
| Erythranthe guttata | scaffold_8 | 1 | CH_egut_19 | 8 | 10 | 3.41341e-19 |
| Erythranthe guttata | scaffold_2 | 1 | CH_egut_48 | 7 | 17 | 0.000000000000201454 |
| Fragaria x ananassa | Fvb7-1 | 1 | CH_fan_80 | 4 | 4 | 0.00000000258016 |
| Glycine max | Gm06 | 1 | CH_gma_133 | 4 | 5 | 0.000000019474 |
| Glycine max | Gm08 | 1 | CH_gma_397 | 3 | 6 | 0.000157741 |
| Hydrangea macrophylla | Hma1.2p1_1374F.1 | 1 | CH_hma_336 | 2 | 2 | 0.000333259 |
| Lupinus albus | Lalb_Chr18 | 1 | CH_lal_233 | 3 | 11 | 0.000112321 |
| Lonicera japonica | GWHAAZE00000004 | 1 | CH_lonja_39 | 7 | 10 | 2.80464e-18 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_3 | 12 | 18 | 1.49316e-31 |
| Medicago truncatula | chr1 | 1 | CH_mtr_482 | 3 | 5 | 0.0000288506 |
| Medicago truncatula | chr2 | 1 | CH_mtr_483 | 3 | 5 | 0.0000288506 |
| Petunia axillaris | Peaxi162Scf00090 | 1 | CH_pax_64 | 4 | 9 | 0.0000000165738 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_169 | 5 | 18 | 0.000000000707146 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_525 | 3 | 8 | 0.0000746792 |
| Simmondsia chinensis | GWHAASQ00000015 | 1 | CH_sci_84 | 3 | 3 | 0.00000130492 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_566 | 3 | 4 | 0.000000498328 |
| Sapria himalayana | scaffold3_21451142 | 1 | CH_shi_130 | 4 | 76 | 0.0000897461 |
| Sapria himalayana | scaffold74_2176963 | 1 | CH_shi_56 | 3 | 9 | 0.0000345738 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 1 | CH_tpr_155 | 5 | 44 | 0.00000305277 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 1 | CH_tpr_173 | 3 | 3 | 0.000008329 |
| Tripterygium wilfordii | NC_052252.1 | 1 | CH_twi_145 | 3 | 6 | 0.00000782913 |
| Aethionema arabicum | LG-2 | 2 | CH_aar_43 | 4 | 4 | 0.000000000287079 |
| Actinidia chinensis | Lachesis_group3 | 2 | CH_ach_51 | 3 | 3 | 0.00000126593 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 2 | CH_amhyb_67 | 3 | 3 | 0.0000023383 |
| Brassica carinata | ChrB01 | 2 | CH_bca_290 | 5 | 53 | 0.000000292843 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 2 | CH_bvu_105 | 3 | 3 | 0.000000575799 |
| Camellia sinensis var. sinensis | Chr1 | 2 | CH_camsi_52 | 6 | 10 | 0.00000000000000287518 |
| Cicer arietinum L. | Ca_LG4_v3 | 2 | CH_car_112 | 3 | 5 | 0.0000149848 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4365 | 2 | CH_cqu_118 | 4 | 6 | 0.0000000113875 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 2 | CH_eca_114 | 4 | 7 | 0.0000000290079 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 2 | CH_eca_297 | 3 | 6 | 0.0000492514 |
| Erythranthe guttata | scaffold_8 | 2 | CH_egut_19 | 8 | 10 | 3.41341e-19 |
| Erythranthe guttata | scaffold_2 | 2 | CH_egut_48 | 7 | 17 | 0.000000000000201454 |
| Fragaria x ananassa | Fvb7-1 | 2 | CH_fan_80 | 4 | 4 | 0.00000000258016 |
| Glycine max | Gm06 | 2 | CH_gma_133 | 4 | 5 | 0.000000019474 |
| Glycine max | Gm08 | 2 | CH_gma_397 | 3 | 6 | 0.000157741 |
| Hydrangea macrophylla | Hma1.2p1_1374F.1 | 2 | CH_hma_336 | 2 | 2 | 0.000333259 |
| Lupinus albus | Lalb_Chr18 | 2 | CH_lal_233 | 3 | 11 | 0.000112321 |
| Lonicera japonica | GWHAAZE00000004 | 2 | CH_lonja_39 | 7 | 10 | 2.80464e-18 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_3 | 12 | 18 | 1.49316e-31 |
| Petunia axillaris | Peaxi162Scf00090 | 2 | CH_pax_64 | 4 | 9 | 0.0000000165738 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_169 | 5 | 18 | 0.000000000707146 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_525 | 3 | 8 | 0.0000746792 |
| Simmondsia chinensis | GWHAASQ00000015 | 2 | CH_sci_84 | 3 | 3 | 0.00000130492 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_566 | 3 | 4 | 0.000000498328 |
| Sapria himalayana | scaffold3_21451142 | 2 | CH_shi_130 | 4 | 76 | 0.0000897461 |
| Sapria himalayana | scaffold74_2176963 | 2 | CH_shi_56 | 3 | 9 | 0.0000345738 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 2 | CH_tpr_155 | 5 | 44 | 0.00000305277 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 2 | CH_tpr_173 | 3 | 3 | 0.000008329 |
| Tripterygium wilfordii | NC_052252.1 | 2 | CH_twi_145 | 3 | 6 | 0.00000782913 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |