Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.post-translational histone modification.histone deacetylation.HD2 histone deacetylase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC03 1 CH_bca_110 4 5 0.000000000567851
Brassica carinata ChrB05 1 CH_bca_135 4 6 0.00000000170331
Brassica carinata ChrB01 1 CH_bca_345 3 3 0.000000664186
Brassica napus BNapus_Darmor_BZH_scaffold_38 1 CH_bna_102 4 6 0.000000000878992
Brassica napus C02 1 CH_bna_135 4 8 0.00000000410103
Brassica oleracea C2 1 CH_bol_54 4 8 0.000000000923763
Brassica rapa A02 1 CH_bra_157 3 9 0.00000812406
Beta vulgaris Chr9_EL10_PGA_scaffold8 1 CH_bvu_233 2 2 0.000248375
Cucumis melo chr11 1 CH_cme_242 2 2 0.000200133
Cucumis sativus L. chr6 1 CH_csa_316 2 3 0.000751231
Medicago truncatula chr4 1 CH_mtr_619 2 2 0.000123259
Olea europaea chr7 1 CH_oeu_358 2 3 0.000480389
Oryza sativa ssp. japonica chr01 1 CH_osa_135 3 7 0.000000585625
Sechium edule LG01 1 CH_sed_303 2 2 0.000428052
Brassica carinata ChrC03 2 CH_bca_110 4 5 0.000000000567851
Brassica carinata ChrB05 2 CH_bca_135 4 6 0.00000000170331
Brassica carinata ChrB01 2 CH_bca_345 3 3 0.000000664186
Brassica oleracea C2 2 CH_bol_54 4 8 0.000000000923763
Brassica rapa A02 2 CH_bra_157 3 9 0.00000812406
Beta vulgaris Chr9_EL10_PGA_scaffold8 2 CH_bvu_233 2 2 0.000248375
Cucumis melo chr11 2 CH_cme_242 2 2 0.000200133
Cucumis sativus L. chr6 2 CH_csa_316 2 3 0.000751231
Olea europaea chr7 2 CH_oeu_358 2 3 0.000480389
Oryza sativa ssp. japonica chr01 2 CH_osa_135 3 7 0.000000585625
Sechium edule LG01 2 CH_sed_303 2 2 0.000428052

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001