Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.post-translational histone modification.histone acetylation.histone acetyltransferase (HAC/HPCAT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 1 CH_arhy_697 2 2 0.000628705
Brassica carinata ChrB04 1 CH_bca_491 3 6 0.0000132782
Lotus japonicus chr5 1 CH_lja_114 3 3 0.0000000767031
Magnolia biondii Chr10 1 CH_mbi_338 2 2 0.0000485661
Micromonas commoda Chr_11 1 CH_mco_20 2 2 0.000197961
Manihot esculenta Chromosome14 1 CH_mes_371 2 2 0.000183189
Medicago truncatula chr6 1 CH_mtr_573 3 18 0.000115541
Quercus lobata CM012294 1 CH_qlo_943 2 3 0.00046464
Simmondsia chinensis GWHAASQ00000010 1 CH_sci_225 2 2 0.000255428
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_77 7 9 3.03219e-22
Sapria himalayana scaffold2_22354274 1 CH_shi_108 2 2 0.0000571804
Trochodendron aralioides group1 1 CH_tar_441 2 2 0.00036022
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_114 3 3 0.000000129529
Vigna mungo CM024079.1 1 CH_vmu_352 2 2 0.000387685
Vanilla planifolia CM028159.1 1 CH_vpl_348 2 3 0.000664951
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 2 CH_arhy_697 2 2 0.000628705
Brassica carinata ChrB04 2 CH_bca_491 3 6 0.0000132782
Lotus japonicus chr5 2 CH_lja_114 3 3 0.0000000767031
Magnolia biondii Chr10 2 CH_mbi_338 2 2 0.0000485661
Micromonas commoda Chr_11 2 CH_mco_20 2 2 0.000197961
Manihot esculenta Chromosome14 2 CH_mes_371 2 2 0.000183189
Quercus lobata CM012294 2 CH_qlo_943 2 3 0.00046464
Simmondsia chinensis GWHAASQ00000010 2 CH_sci_225 2 2 0.000255428
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_77 7 9 3.03219e-22
Sapria himalayana scaffold2_22354274 2 CH_shi_108 2 2 0.0000571804
Trochodendron aralioides group1 2 CH_tar_441 2 2 0.00036022
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_114 3 3 0.000000129529
Vigna mungo CM024079.1 2 CH_vmu_352 2 2 0.000387685
Vanilla planifolia CM028159.1 2 CH_vpl_348 2 3 0.000664951

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001