Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.jasmonic acid.biosynthesis.allene oxidase synthase (AOS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR05 1 CH_aox_46 3 3 0.00000000964818
Cannabis sativa NC_044370.1 1 CH_cansat_402 2 2 0.000984963
Capsicum annuum PGAv.1.6.scaffold322 1 CH_can_130 3 3 0.000000102372
Coffea canephora chr2 1 CH_ccan_305 2 6 0.000383294
Carpinus fangiana Cfa02 1 CH_cfa_354 2 2 0.000454408
Cucumis melo chr01 1 CH_cme_241 2 2 0.000200133
Chenopodium quinoa C_Quinoa_Scaffold_3670 1 CH_cqu_37 5 5 0.00000000000000211724
Cucumis sativus L. chr7 1 CH_csa_267 2 2 0.000250428
Fragaria x ananassa Fvb2-3 1 CH_fan_238 3 8 0.00000345026
Fragaria vesca Fvb2 1 CH_fve_170 3 5 0.0000005205
Gossypium hirsutum D06 1 CH_ghi_327 3 4 0.00000122334
Gossypium raimondii Chr10 1 CH_gra_422 2 2 0.000536107
Lonicera japonica GWHAAZE00000004 1 CH_lonja_548 2 2 0.000359324
Manihot esculenta Chromosome05 1 CH_mes_466 2 2 0.000610631
Manihot esculenta Chromosome18 1 CH_mes_467 2 2 0.000610631
Nelumbo nucifera chr5 1 CH_nnu_89 3 4 0.0000000456254
Oryza sativa ssp. japonica chr02 1 CH_osa_316 2 3 0.000316874
Petunia axillaris Peaxi162Scf00016 1 CH_pax_356 2 2 0.000703556
Populus trichocarpa Chr04 1 CH_ptr_508 2 2 0.000578001
Quercus lobata 11 1 CH_qlo_234 4 7 0.0000000000722455
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_81 5 12 0.0000000000000900029
Rhododendron simsii chr11 1 CH_rsi_498 2 2 0.000387184
Salvia bowleyana GWHASIU00000002 1 CH_sbo_381 2 2 0.000272988
Sechium edule LG10 1 CH_sed_302 2 2 0.000428052
Solanum lycopersicum SL4.0ch01 1 CH_sly_156 3 3 0.000000103353
Solanum pennellii Spenn-ch01 1 CH_spe_138 3 3 0.0000000593529
Tripterygium wilfordii NC_052243.1 1 CH_twi_218 2 2 0.000167252
Zea mays 1 1 CH_zma_255 2 2 0.000511313
Aquilegia oxysepala CHR05 2 CH_aox_46 3 3 0.00000000964818
Cannabis sativa NC_044370.1 2 CH_cansat_402 2 2 0.000984963
Capsicum annuum PGAv.1.6.scaffold322 2 CH_can_130 3 3 0.000000102372
Coffea canephora chr2 2 CH_ccan_305 2 6 0.000383294
Carpinus fangiana Cfa02 2 CH_cfa_354 2 2 0.000454408
Cucumis melo chr01 2 CH_cme_241 2 2 0.000200133
Chenopodium quinoa C_Quinoa_Scaffold_3670 2 CH_cqu_37 5 5 0.00000000000000211724
Cucumis sativus L. chr7 2 CH_csa_267 2 2 0.000250428
Eucalyptus grandis Chr07 2 CH_egr_359 4 11 0.00000000694253
Fragaria x ananassa Fvb2-3 2 CH_fan_238 3 8 0.00000345026
Fragaria vesca Fvb2 2 CH_fve_170 3 5 0.0000005205
Gossypium hirsutum D06 2 CH_ghi_327 3 4 0.00000122334
Gossypium raimondii Chr10 2 CH_gra_422 2 2 0.000536107
Lonicera japonica GWHAAZE00000004 2 CH_lonja_548 2 2 0.000359324
Manihot esculenta Chromosome05 2 CH_mes_466 2 2 0.000610631
Manihot esculenta Chromosome18 2 CH_mes_467 2 2 0.000610631
Nelumbo nucifera chr5 2 CH_nnu_89 3 4 0.0000000456254
Oryza sativa ssp. japonica chr02 2 CH_osa_316 2 3 0.000316874
Petunia axillaris Peaxi162Scf00016 2 CH_pax_356 2 2 0.000703556
Populus trichocarpa Chr04 2 CH_ptr_508 2 2 0.000578001
Quercus lobata 11 2 CH_qlo_234 4 7 0.0000000000722455
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_81 5 12 0.0000000000000900029
Rhododendron simsii chr11 2 CH_rsi_498 2 2 0.000387184
Salvia bowleyana GWHASIU00000002 2 CH_sbo_381 2 2 0.000272988
Sechium edule LG10 2 CH_sed_302 2 2 0.000428052
Solanum lycopersicum SL4.0ch01 2 CH_sly_156 3 3 0.000000103353
Solanum pennellii Spenn-ch01 2 CH_spe_138 3 3 0.0000000593529
Tripterygium wilfordii NC_052243.1 2 CH_twi_218 2 2 0.000167252
Zea mays 1 2 CH_zma_255 2 2 0.000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001