Functional clusters
Information
- Type MapMan
- Description Phytohormone action.jasmonic acid.biosynthesis.13-lipoxygenase (LOX)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-7 | 1 | CH_aar_212 | 2 | 2 | 0.000273698 |
| Acer truncatum | chr3 | 1 | CH_acertr_215 | 3 | 11 | 0.0000122921 |
| Brassica napus | C06 | 1 | CH_bna_262 | 3 | 3 | 0.000000686602 |
| Brassica napus | A07 | 1 | CH_bna_77 | 4 | 4 | 0.00000000011464 |
| Brassica rapa | A07 | 1 | CH_bra_336 | 3 | 24 | 0.000468881 |
| Camellia sinensis var. sinensis | Chr11 | 1 | CH_camsi_102 | 4 | 4 | 0.0000000000101245 |
| Cannabis sativa | NC_044375.1 | 1 | CH_cansat_16 | 7 | 10 | 6.06216e-21 |
| Cicer arietinum L. | Ca_LG5_v3 | 1 | CH_car_133 | 3 | 12 | 0.0000698691 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_19 | 7 | 8 | 6.91404e-21 |
| Carpinus fangiana | Cfa04 | 1 | CH_cfa_27 | 5 | 6 | 0.00000000000000888403 |
| Carya illinoinensis | Chr13 | 1 | CH_cil_129 | 5 | 16 | 0.000000000060847 |
| Cucumis melo | chr05 | 1 | CH_cme_24 | 5 | 5 | 0.00000000000000312005 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 1 | CH_cqu_108 | 4 | 6 | 0.00000000342156 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 1 | CH_cqu_78 | 4 | 4 | 0.000000000228193 |
| Cucumis sativus L. | chr4 | 1 | CH_csa_9 | 8 | 13 | 5.15418e-22 |
| Daucus carota | DCARv2_Chr7 | 1 | CH_dca_476 | 2 | 2 | 0.000956663 |
| Durio zibethinus | NW_019167982.1 | 1 | CH_dzi_362 | 2 | 2 | 0.000695233 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 1 | CH_eca_137 | 3 | 3 | 0.000000105712 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 1 | CH_eca_528 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr10 | 1 | CH_egr_225 | 5 | 14 | 0.00000000000369789 |
| Erythranthe guttata | scaffold_4 | 1 | CH_egut_21 | 6 | 6 | 1.29001e-18 |
| Fragaria x ananassa | Fvb7-2 | 1 | CH_fan_239 | 3 | 5 | 0.0000034916 |
| Glycine max | Gm20 | 1 | CH_gma_258 | 3 | 5 | 0.00000617845 |
| Helianthus annuus | HanXRQChr02 | 1 | CH_han_293 | 3 | 3 | 0.00000101918 |
| Helianthus annuus | HanXRQChr13 | 1 | CH_han_43 | 6 | 11 | 0.00000000000000448016 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_162 | 4 | 14 | 0.00000000966839 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_52 | 6 | 13 | 0.0000000000000237479 |
| Manihot esculenta | Chromosome10 | 1 | CH_mes_184 | 3 | 3 | 0.000000313221 |
| Medicago truncatula | chr3 | 1 | CH_mtr_270 | 3 | 3 | 0.0000000506436 |
| Oryza sativa ssp. japonica | chr08 | 1 | CH_osa_388 | 2 | 2 | 0.000792184 |
| Punica granatum | NC_045132.1 | 1 | CH_pgr_128 | 3 | 4 | 0.000000337802 |
| Prunus persica | Pp02 | 1 | CH_ppe_244 | 3 | 6 | 0.00000333767 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_221 | 3 | 4 | 0.00000112241 |
| Quercus lobata | 1 | 1 | CH_qlo_164 | 5 | 9 | 0.000000000000375925 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 1 | CH_rch_346 | 3 | 5 | 0.00000133473 |
| Salix brachista | GWHAAZH00000001 | 1 | CH_sbr_108 | 3 | 3 | 0.000000119127 |
| Sechium edule | LG01 | 1 | CH_sed_18 | 6 | 9 | 9.78077e-17 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_154 | 3 | 4 | 0.000000118699 |
| Selenicereus undatus | Scaffold_33676 | 1 | CH_sun_280 | 2 | 2 | 0.000726639 |
| Trochodendron aralioides | group1 | 1 | CH_tar_40 | 5 | 14 | 0.0000000000245545 |
| Theobroma cacao | Chromosome_9 | 1 | CH_tca_196 | 3 | 5 | 0.000000804466 |
| Tarenaya hassleriana | NW_010964598.1 | 1 | CH_tha_147 | 2 | 2 | 0.000209541 |
| Tripterygium wilfordii | NC_052235.1 | 1 | CH_twi_121 | 3 | 4 | 0.00000223753 |
| Vigna mungo | CM024075.1 | 1 | CH_vmu_397 | 2 | 2 | 0.000646141 |
| Vitis vinifera | chr6 | 1 | CH_vvi_81 | 4 | 4 | 0.0000000000462124 |
| Aethionema arabicum | LG-7 | 2 | CH_aar_212 | 2 | 2 | 0.000273698 |
| Acer truncatum | chr3 | 2 | CH_acertr_215 | 3 | 11 | 0.0000122921 |
| Brassica rapa | A07 | 2 | CH_bra_336 | 3 | 24 | 0.000468881 |
| Camellia sinensis var. sinensis | Chr11 | 2 | CH_camsi_102 | 4 | 4 | 0.0000000000101245 |
| Cannabis sativa | NC_044375.1 | 2 | CH_cansat_16 | 7 | 10 | 6.06216e-21 |
| Cicer arietinum L. | Ca_LG5_v3 | 2 | CH_car_133 | 3 | 12 | 0.0000698691 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_19 | 7 | 8 | 6.91404e-21 |
| Carpinus fangiana | Cfa04 | 2 | CH_cfa_27 | 5 | 6 | 0.00000000000000888403 |
| Carya illinoinensis | Chr13 | 2 | CH_cil_129 | 5 | 16 | 0.000000000060847 |
| Cucumis melo | chr05 | 2 | CH_cme_24 | 5 | 5 | 0.00000000000000312005 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 2 | CH_cqu_108 | 4 | 6 | 0.00000000342156 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 2 | CH_cqu_78 | 4 | 4 | 0.000000000228193 |
| Cucumis sativus L. | chr4 | 2 | CH_csa_9 | 8 | 13 | 5.15418e-22 |
| Daucus carota | DCARv2_Chr7 | 2 | CH_dca_476 | 2 | 2 | 0.000956663 |
| Durio zibethinus | NW_019167982.1 | 2 | CH_dzi_362 | 2 | 2 | 0.000695233 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 2 | CH_eca_137 | 3 | 3 | 0.000000105712 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 2 | CH_eca_528 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_225 | 5 | 14 | 0.00000000000369789 |
| Erythranthe guttata | scaffold_4 | 2 | CH_egut_21 | 6 | 6 | 1.29001e-18 |
| Fragaria x ananassa | Fvb7-2 | 2 | CH_fan_239 | 3 | 5 | 0.0000034916 |
| Glycine max | Gm20 | 2 | CH_gma_258 | 3 | 5 | 0.00000617845 |
| Helianthus annuus | HanXRQChr02 | 2 | CH_han_293 | 3 | 3 | 0.00000101918 |
| Helianthus annuus | HanXRQChr13 | 2 | CH_han_43 | 6 | 11 | 0.00000000000000448016 |
| Lotus japonicus | chr6 | 2 | CH_lja_196 | 3 | 6 | 0.00000306705 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_162 | 4 | 14 | 0.00000000966839 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_52 | 6 | 13 | 0.0000000000000237479 |
| Manihot esculenta | Chromosome10 | 2 | CH_mes_184 | 3 | 3 | 0.000000313221 |
| Oryza sativa ssp. japonica | chr08 | 2 | CH_osa_388 | 2 | 2 | 0.000792184 |
| Punica granatum | NC_045132.1 | 2 | CH_pgr_128 | 3 | 4 | 0.000000337802 |
| Prunus persica | Pp02 | 2 | CH_ppe_244 | 3 | 6 | 0.00000333767 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_221 | 3 | 4 | 0.00000112241 |
| Quercus lobata | 1 | 2 | CH_qlo_164 | 5 | 9 | 0.000000000000375925 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 2 | CH_rch_346 | 3 | 5 | 0.00000133473 |
| Salix brachista | GWHAAZH00000001 | 2 | CH_sbr_108 | 3 | 3 | 0.000000119127 |
| Sechium edule | LG01 | 2 | CH_sed_18 | 6 | 9 | 9.78077e-17 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_154 | 3 | 4 | 0.000000118699 |
| Selenicereus undatus | Scaffold_33676 | 2 | CH_sun_280 | 2 | 2 | 0.000726639 |
| Trochodendron aralioides | group1 | 2 | CH_tar_40 | 5 | 14 | 0.0000000000245545 |
| Theobroma cacao | Chromosome_9 | 2 | CH_tca_196 | 3 | 5 | 0.000000804466 |
| Tarenaya hassleriana | NW_010964598.1 | 2 | CH_tha_147 | 2 | 2 | 0.000209541 |
| Tripterygium wilfordii | NC_052235.1 | 2 | CH_twi_121 | 3 | 4 | 0.00000223753 |
| Vigna mungo | CM024075.1 | 2 | CH_vmu_397 | 2 | 2 | 0.000646141 |
| Vitis vinifera | chr6 | 2 | CH_vvi_81 | 4 | 4 | 0.0000000000462124 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |