Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.brassinosteroid.conjugation and degradation.steroid sulphotransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 1 CH_arhy_144 4 6 0.0000000000845197
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 1 CH_arhy_149 4 7 0.0000000001972
Brassica carinata ChrC03 1 CH_bca_49 4 4 0.00000000000205134
Brassica carinata ChrB07 1 CH_bca_996 2 2 0.00059854
Brassica napus A09 1 CH_bna_317 3 11 0.00000298041
Brassica oleracea C2 1 CH_bol_72 3 3 0.00000000641041
Corylus avellana 9 1 CH_cav_473 2 5 0.000766607
Coffea canephora chr11 1 CH_ccan_129 2 2 0.00000425891
Carya illinoinensis Chr05 1 CH_cil_191 3 4 0.0000000230512
Chenopodium quinoa C_Quinoa_Scaffold_1000 1 CH_cqu_473 2 3 0.000426422
Capsella rubella scaffold_5 1 CH_cru_272 2 2 0.0000731154
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_86 3 3 0.00000000302034
Fragaria x ananassa Fvb4-1 1 CH_fan_396 2 2 0.000111022
Fragaria vesca Fvb4 1 CH_fve_36 4 4 0.000000000000613381
Helianthus annuus HanXRQChr15 1 CH_han_357 4 77 0.00000816064
Helianthus annuus HanXRQChr17 1 CH_han_734 2 2 0.0008115
Magnolia biondii Chr03 1 CH_mbi_336 2 2 0.0000485661
Malus domestica Chr16 1 CH_mdo_535 2 4 0.000227518
Punica granatum NC_045129.1 1 CH_pgr_28 5 9 0.000000000000179735
Populus trichocarpa Chr10 1 CH_ptr_137 3 3 0.00000000501143
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_592 2 2 0.000119596
Salix brachista GWHAAZH00000010 1 CH_sbr_263 2 3 0.000189036
Solanum lycopersicum SL4.0ch05 1 CH_sly_255 3 6 0.0000170427
Solanum pennellii Spenn-ch05 1 CH_spe_71 4 6 0.000000000277156
Solanum tuberosum ST4.03ch05 1 CH_stu_28 7 17 2.21869e-19
Theobroma cacao Chromosome_2 1 CH_tca_324 2 3 0.000219708
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 2 CH_arhy_144 4 6 0.0000000000845197
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 2 CH_arhy_149 4 7 0.0000000001972
Brassica carinata ChrC03 2 CH_bca_49 4 4 0.00000000000205134
Brassica carinata ChrB07 2 CH_bca_996 2 2 0.00059854
Brassica oleracea C2 2 CH_bol_72 3 3 0.00000000641041
Corylus avellana 9 2 CH_cav_473 2 5 0.000766607
Coffea canephora chr11 2 CH_ccan_129 2 2 0.00000425891
Carya illinoinensis Chr05 2 CH_cil_191 3 4 0.0000000230512
Chenopodium quinoa C_Quinoa_Scaffold_1000 2 CH_cqu_473 2 3 0.000426422
Capsella rubella scaffold_5 2 CH_cru_272 2 2 0.0000731154
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_86 3 3 0.00000000302034
Eucalyptus grandis Chr03 2 CH_egr_712 3 7 0.0000653916
Fragaria x ananassa Fvb4-1 2 CH_fan_396 2 2 0.000111022
Fragaria vesca Fvb4 2 CH_fve_36 4 4 0.000000000000613381
Helianthus annuus HanXRQChr15 2 CH_han_357 4 77 0.00000816064
Helianthus annuus HanXRQChr17 2 CH_han_734 2 2 0.0008115
Magnolia biondii Chr03 2 CH_mbi_336 2 2 0.0000485661
Malus domestica Chr16 2 CH_mdo_535 2 4 0.000227518
Punica granatum NC_045129.1 2 CH_pgr_28 5 9 0.000000000000179735
Populus trichocarpa Chr10 2 CH_ptr_137 3 3 0.00000000501143
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_592 2 2 0.000119596
Salix brachista GWHAAZH00000010 2 CH_sbr_263 2 3 0.000189036
Solanum lycopersicum SL4.0ch05 2 CH_sly_255 3 6 0.0000170427
Solanum pennellii Spenn-ch05 2 CH_spe_71 4 6 0.000000000277156
Solanum tuberosum ST4.03ch05 2 CH_stu_28 7 17 2.21869e-19
Theobroma cacao Chromosome_2 2 CH_tca_324 2 3 0.000219708

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001