Functional clusters
Information
- Type MapMan
- Description Phytohormone action.auxin.transport.polar auxin transport.auxin transporter (PIN)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00038 | 1 | CH_atr_39 | 5 | 8 | 0.00000000000772427 |
| Brassica carinata | ChrB08 | 1 | CH_bca_452 | 3 | 3 | 0.00000730674 |
| Brassica carinata | ChrB08 | 1 | CH_bca_734 | 3 | 6 | 0.000145997 |
| Chara braunii | BFEA01000325 | 1 | CH_cbr_109 | 2 | 2 | 0.000215781 |
| Citrullus lanatus | CG_Chr11 | 1 | CH_cla_74 | 4 | 16 | 0.00000187968 |
| Cucumis melo | chr05 | 1 | CH_cme_114 | 3 | 3 | 0.00000146867 |
| Daucus carota | DCARv2_Chr7 | 1 | CH_dca_165 | 3 | 3 | 0.00000414906 |
| Daucus carota | DCARv2_Chr9 | 1 | CH_dca_93 | 4 | 6 | 0.0000000277663 |
| Helianthus annuus | HanXRQChr16 | 1 | CH_han_369 | 3 | 4 | 0.0000102115 |
| Marchantia polymorpha | scaffold_27 | 1 | CH_mpo_48 | 3 | 5 | 0.00000182922 |
| Olea europaea | scaffold119 | 1 | CH_oeu_197 | 3 | 6 | 0.000113558 |
| Punica granatum | NC_045127.1 | 1 | CH_pgr_44 | 5 | 6 | 0.00000000000623014 |
| Pisum sativum | chr4LG4 | 1 | CH_psa_152 | 3 | 4 | 0.0000026934 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_286 | 3 | 3 | 0.00000051745 |
| Phaseolus vulgaris | Chr09 | 1 | CH_pvu_212 | 3 | 3 | 0.00000453468 |
| Quercus lobata | CM012294 | 1 | CH_qlo_459 | 3 | 3 | 0.00000047981 |
| Salvia bowleyana | GWHASIU00000001 | 1 | CH_sbo_65 | 5 | 7 | 0.00000000000294707 |
| Sechium edule | LG11 | 1 | CH_sed_169 | 3 | 5 | 0.0000277723 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_149 | 3 | 3 | 0.0000024583 |
| Vitis vinifera | chr4 | 1 | CH_vvi_420 | 3 | 14 | 0.00069274 |
| Amborella trichopoda | AmTr_v1.0_scaffold00038 | 2 | CH_atr_39 | 5 | 8 | 0.00000000000772427 |
| Brassica carinata | ChrB08 | 2 | CH_bca_452 | 3 | 3 | 0.00000730674 |
| Brassica carinata | ChrB08 | 2 | CH_bca_734 | 3 | 6 | 0.000145997 |
| Chara braunii | BFEA01000325 | 2 | CH_cbr_109 | 2 | 2 | 0.000215781 |
| Citrullus lanatus | CG_Chr11 | 2 | CH_cla_74 | 4 | 16 | 0.00000187968 |
| Cucumis melo | chr05 | 2 | CH_cme_114 | 3 | 3 | 0.00000146867 |
| Daucus carota | DCARv2_Chr7 | 2 | CH_dca_165 | 3 | 3 | 0.00000414906 |
| Daucus carota | DCARv2_Chr9 | 2 | CH_dca_93 | 4 | 6 | 0.0000000277663 |
| Eucalyptus grandis | Chr02 | 2 | CH_egr_589 | 3 | 4 | 0.00000934905 |
| Helianthus annuus | HanXRQChr16 | 2 | CH_han_369 | 3 | 4 | 0.0000102115 |
| Marchantia polymorpha | scaffold_27 | 2 | CH_mpo_48 | 3 | 5 | 0.00000182922 |
| Olea europaea | scaffold119 | 2 | CH_oeu_197 | 3 | 6 | 0.000113558 |
| Punica granatum | NC_045127.1 | 2 | CH_pgr_44 | 5 | 6 | 0.00000000000623014 |
| Pisum sativum | chr4LG4 | 2 | CH_psa_152 | 3 | 4 | 0.0000026934 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_286 | 3 | 3 | 0.00000051745 |
| Phaseolus vulgaris | Chr09 | 2 | CH_pvu_212 | 3 | 3 | 0.00000453468 |
| Quercus lobata | CM012294 | 2 | CH_qlo_459 | 3 | 3 | 0.00000047981 |
| Salvia bowleyana | GWHASIU00000001 | 2 | CH_sbo_65 | 5 | 7 | 0.00000000000294707 |
| Sechium edule | LG11 | 2 | CH_sed_169 | 3 | 5 | 0.0000277723 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_149 | 3 | 3 | 0.0000024583 |
| Vitis vinifera | chr4 | 2 | CH_vvi_420 | 3 | 14 | 0.00069274 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |