Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.auxin.conjugation and degradation.indole-3-acetic acid dioxygenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_1 1 CH_aly_234 2 2 0.0000660044
Arabidopsis thaliana Chr1 1 CH_ath_259 2 3 0.0000859463
Brassica carinata ChrC07 1 CH_bca_933 2 2 0.000448905
Brassica napus A06 1 CH_bna_224 3 4 0.000000247782
Brassica oleracea C8 1 CH_bol_350 2 2 0.000326861
Brassica rapa A09 1 CH_bra_320 2 2 0.000429314
Camellia sinensis var. sinensis Chr1 1 CH_camsi_158 4 7 0.000000000708507
Camellia sinensis var. sinensis Chr5 1 CH_camsi_574 3 14 0.0000642153
Cannabis sativa NC_044379.1 1 CH_cansat_227 2 2 0.0000656642
Cardamine hirsuta Chr1 1 CH_chi_240 2 2 0.0000691204
Carya illinoinensis Chr13 1 CH_cil_88 4 4 0.000000000000714457
Chenopodium quinoa C_Quinoa_Scaffold_1000 1 CH_cqu_56 4 4 0.00000000000478726
Capsella rubella scaffold_1 1 CH_cru_271 2 2 0.0000731154
Daucus carota DCARv2_Chr2 1 CH_dca_365 2 2 0.000382665
Davidia involucrata GWHABJS00000013 1 CH_din_11 6 6 2.11465e-17
Davidia involucrata GWHABJS00000014 1 CH_din_38 5 8 0.00000000000525794
Erythranthe guttata scaffold_11 1 CH_egut_158 3 3 0.0000000795325
Erythranthe guttata scaffold_8 1 CH_egut_466 2 2 0.000728147
Eutrema salsugineum scaffold_5 1 CH_esa_177 2 2 0.0000761499
Glycine max Gm13 1 CH_gma_225 3 7 0.00000151232
Glycine max Gm01 1 CH_gma_564 2 2 0.000569336
Hydrangea macrophylla Hma1.2p1_0085F.1 1 CH_hma_410 2 3 0.000999685
Lotus japonicus chr2 1 CH_lja_145 3 5 0.000000306774
Magnolia biondii Chr04 1 CH_mbi_72 4 7 0.0000000000120279
Punica granatum NC_045129.1 1 CH_pgr_135 3 5 0.000000844425
Phaseolus vulgaris Chr02 1 CH_pvu_418 2 2 0.000440836
Phaseolus vulgaris Chr04 1 CH_pvu_419 2 2 0.000440836
Rhododendron simsii chr06 1 CH_rsi_42 6 7 1.48075e-17
Salvia bowleyana GWHASIU00000001 1 CH_sbo_160 3 6 0.000000248384
Solanum lycopersicum SL4.0ch02 1 CH_sly_128 3 3 0.00000000516764
Schrenkiella parvula ch1-1 1 CH_spa_174 2 2 0.000078734
Solanum pennellii Spenn-ch02 1 CH_spe_105 3 3 0.00000000296764
Tripterygium wilfordii NC_052235.1 1 CH_twi_103 3 3 0.000000261091
Tripterygium wilfordii NC_052240.1 1 CH_twi_46 4 4 0.000000000036392
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_65 4 5 0.000000000421243
Vigna mungo CM024074.1 1 CH_vmu_87 3 3 0.0000000626267
Vanilla planifolia CM028158.1 1 CH_vpl_4 9 43 7.09161e-21
Arabidopsis lyrata scaffold_1 2 CH_aly_234 2 2 0.0000660044
Arabidopsis thaliana Chr1 2 CH_ath_259 2 3 0.0000859463
Brassica carinata ChrC07 2 CH_bca_933 2 2 0.000448905
Brassica oleracea C8 2 CH_bol_350 2 2 0.000326861
Brassica rapa A09 2 CH_bra_320 2 2 0.000429314
Camellia sinensis var. sinensis Chr1 2 CH_camsi_158 4 7 0.000000000708507
Camellia sinensis var. sinensis Chr5 2 CH_camsi_574 3 14 0.0000642153
Cannabis sativa NC_044379.1 2 CH_cansat_227 2 2 0.0000656642
Cardamine hirsuta Chr1 2 CH_chi_240 2 2 0.0000691204
Carya illinoinensis Chr13 2 CH_cil_88 4 4 0.000000000000714457
Chenopodium quinoa C_Quinoa_Scaffold_1000 2 CH_cqu_56 4 4 0.00000000000478726
Capsella rubella scaffold_1 2 CH_cru_271 2 2 0.0000731154
Daucus carota DCARv2_Chr2 2 CH_dca_365 2 2 0.000382665
Davidia involucrata GWHABJS00000013 2 CH_din_11 6 6 2.11465e-17
Davidia involucrata GWHABJS00000014 2 CH_din_38 5 8 0.00000000000525794
Erythranthe guttata scaffold_11 2 CH_egut_158 3 3 0.0000000795325
Erythranthe guttata scaffold_8 2 CH_egut_466 2 2 0.000728147
Eutrema salsugineum scaffold_5 2 CH_esa_177 2 2 0.0000761499
Glycine max Gm13 2 CH_gma_225 3 7 0.00000151232
Glycine max Gm01 2 CH_gma_564 2 2 0.000569336
Hydrangea macrophylla Hma1.2p1_0085F.1 2 CH_hma_410 2 3 0.000999685
Lotus japonicus chr2 2 CH_lja_145 3 5 0.000000306774
Magnolia biondii Chr04 2 CH_mbi_72 4 7 0.0000000000120279
Punica granatum NC_045129.1 2 CH_pgr_135 3 5 0.000000844425
Phaseolus vulgaris Chr02 2 CH_pvu_418 2 2 0.000440836
Phaseolus vulgaris Chr04 2 CH_pvu_419 2 2 0.000440836
Rhododendron simsii chr06 2 CH_rsi_42 6 7 1.48075e-17
Salvia bowleyana GWHASIU00000001 2 CH_sbo_160 3 6 0.000000248384
Solanum lycopersicum SL4.0ch02 2 CH_sly_128 3 3 0.00000000516764
Schrenkiella parvula ch1-1 2 CH_spa_174 2 2 0.000078734
Solanum pennellii Spenn-ch02 2 CH_spe_105 3 3 0.00000000296764
Tripterygium wilfordii NC_052235.1 2 CH_twi_103 3 3 0.000000261091
Tripterygium wilfordii NC_052240.1 2 CH_twi_46 4 4 0.000000000036392
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_65 4 5 0.000000000421243
Vigna mungo CM024074.1 2 CH_vmu_87 3 3 0.0000000626267
Vanilla planifolia CM028158.1 2 CH_vpl_4 9 43 7.09161e-21

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001