Functional clusters
Information
- Type MapMan
- Description Phytohormone action.auxin.biosynthesis.indole-3-pyruvic acid (IPyA) pathway.flavin-dependent monooxygenase (YUCCA)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 1 | CH_aag_12 | 5 | 8 | 0.000000000000975633 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 1 | CH_arhy_103 | 6 | 11 | 0.000000000000486073 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 1 | CH_arhy_332 | 4 | 13 | 0.00000337851 |
| Amborella trichopoda | AmTr_v1.0_scaffold00122 | 1 | CH_atr_136 | 3 | 6 | 0.0000105966 |
| Corchorus olitorius | AWUE01013554.1 | 1 | CH_col_112 | 2 | 2 | 0.000876296 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_59 | 5 | 14 | 0.000000000744168 |
| Helianthus annuus | HanXRQChr10 | 1 | CH_han_231 | 5 | 16 | 0.000000111213 |
| Helianthus annuus | HanXRQChr01 | 1 | CH_han_3 | 15 | 16 | 1.591e-41 |
| Helianthus annuus | HanXRQChr04 | 1 | CH_han_416 | 3 | 3 | 0.0000363208 |
| Helianthus annuus | HanXRQChr05 | 1 | CH_han_538 | 3 | 4 | 0.000145188 |
| Lonicera japonica | GWHAAZE00000007 | 1 | CH_lonja_182 | 4 | 7 | 0.0000000307599 |
| Magnolia biondii | Chr06 | 1 | CH_mbi_302 | 3 | 8 | 0.0000326641 |
| Malus domestica | Chr10 | 1 | CH_mdo_124 | 4 | 4 | 0.000000000500625 |
| Medicago truncatula | chr3 | 1 | CH_mtr_373 | 3 | 3 | 0.00000141802 |
| Olea europaea | chr22 | 1 | CH_oeu_47 | 4 | 6 | 0.0000000162805 |
| Olea europaea | chr5 | 1 | CH_oeu_48 | 4 | 6 | 0.0000000162805 |
| Pisum sativum | chr5LG3 | 1 | CH_psa_160 | 3 | 3 | 0.00000395512 |
| Quercus lobata | 12 | 1 | CH_qlo_126 | 6 | 9 | 0.00000000000000857566 |
| Quercus lobata | CM012294 | 1 | CH_qlo_533 | 3 | 3 | 0.00000271892 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_741 | 3 | 17 | 0.000462523 |
| Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_621 | 3 | 16 | 0.000800499 |
| Vitis vinifera | chr18 | 1 | CH_vvi_247 | 3 | 7 | 0.0000500661 |
| Zea mays | 4 | 1 | CH_zma_45 | 4 | 4 | 0.00000000155453 |
| Anthoceros agrestis | Sc2ySwM_117 | 2 | CH_aag_12 | 5 | 8 | 0.000000000000975633 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 2 | CH_arhy_103 | 6 | 11 | 0.000000000000486073 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 2 | CH_arhy_332 | 4 | 13 | 0.00000337851 |
| Amborella trichopoda | AmTr_v1.0_scaffold00122 | 2 | CH_atr_136 | 3 | 6 | 0.0000105966 |
| Corchorus olitorius | AWUE01013554.1 | 2 | CH_col_112 | 2 | 2 | 0.000876296 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_59 | 5 | 14 | 0.000000000744168 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_562 | 3 | 3 | 0.00000419289 |
| Helianthus annuus | HanXRQChr10 | 2 | CH_han_231 | 5 | 16 | 0.000000111213 |
| Helianthus annuus | HanXRQChr01 | 2 | CH_han_3 | 15 | 16 | 1.591e-41 |
| Helianthus annuus | HanXRQChr04 | 2 | CH_han_416 | 3 | 3 | 0.0000363208 |
| Helianthus annuus | HanXRQChr05 | 2 | CH_han_538 | 3 | 4 | 0.000145188 |
| Lotus japonicus | chr1 | 2 | CH_lja_203 | 3 | 3 | 0.00000521581 |
| Lonicera japonica | GWHAAZE00000007 | 2 | CH_lonja_182 | 4 | 7 | 0.0000000307599 |
| Magnolia biondii | Chr06 | 2 | CH_mbi_302 | 3 | 8 | 0.0000326641 |
| Malus domestica | Chr10 | 2 | CH_mdo_124 | 4 | 4 | 0.000000000500625 |
| Olea europaea | chr22 | 2 | CH_oeu_47 | 4 | 6 | 0.0000000162805 |
| Olea europaea | chr5 | 2 | CH_oeu_48 | 4 | 6 | 0.0000000162805 |
| Pisum sativum | chr5LG3 | 2 | CH_psa_160 | 3 | 3 | 0.00000395512 |
| Quercus lobata | 12 | 2 | CH_qlo_126 | 6 | 9 | 0.00000000000000857566 |
| Quercus lobata | CM012294 | 2 | CH_qlo_533 | 3 | 3 | 0.00000271892 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_741 | 3 | 17 | 0.000462523 |
| Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_621 | 3 | 16 | 0.000800499 |
| Vitis vinifera | chr18 | 2 | CH_vvi_247 | 3 | 7 | 0.0000500661 |
| Zea mays | 4 | 2 | CH_zma_45 | 4 | 4 | 0.00000000155453 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |