Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.RALF/RALFL-peptide activity.RALF/RALFL-precursor polypeptide

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_2 1 CH_aly_270 3 4 0.000142511
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 1 CH_arhy_100 5 5 0.000000000000396373
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 1 CH_arhy_99 5 5 0.000000000000396373
Arabidopsis thaliana Chr2 1 CH_ath_100 4 5 0.0000000184623
Amborella trichopoda AmTr_v1.0_scaffold00067 1 CH_atr_140 3 5 0.0000113543
Brassica carinata ChrC04 1 CH_bca_5 9 10 1.12663e-22
Brassica carinata ChrB04 1 CH_bca_69 5 5 0.0000000000330629
Brassica napus C09 1 CH_bna_11 7 8 4.61961e-17
Brassica oleracea C9 1 CH_bol_12 8 9 1.33358e-20
Camellia sinensis var. sinensis Chr9 1 CH_camsi_141 6 38 0.000000000231895
Cardamine hirsuta Chr3 1 CH_chi_182 3 3 0.00000817004
Cardamine hirsuta Chr7 1 CH_chi_183 3 3 0.00000817004
Carya illinoinensis Chr01 1 CH_cil_508 3 11 0.000531082
Carica papaya supercontig_8 1 CH_cpa_123 3 4 0.0000197303
Capsella rubella scaffold_2 1 CH_cru_124 4 4 0.0000000479879
Capsella rubella scaffold_6 1 CH_cru_170 4 6 0.000000718546
Cucumis sativus L. chr5 1 CH_csa_182 3 5 0.0000475205
Erythranthe guttata scaffold_8 1 CH_egut_97 4 4 0.000000000828192
Eutrema salsugineum scaffold_7 1 CH_esa_76 4 4 0.0000000363085
Gossypium hirsutum D07 1 CH_ghi_2 24 30 5.04882e-60
Gossypium hirsutum A07 1 CH_ghi_278 4 4 0.00000025252
Gossypium hirsutum D11 1 CH_ghi_40 9 16 1.04364e-17
Gossypium hirsutum A11 1 CH_ghi_9 11 12 1.71795e-26
Glycine max Gm08 1 CH_gma_409 3 7 0.000220913
Gossypium raimondii Chr07 1 CH_gra_186 4 9 0.00000208803
Gossypium raimondii Chr01 1 CH_gra_266 3 4 0.0000854835
Hydrangea macrophylla Hma1.2p1_0349F.1 1 CH_hma_314 3 8 0.000227569
Lupinus albus Lalb_Chr22 1 CH_lal_140 3 3 0.00000636284
Malus domestica Chr16 1 CH_mdo_593 3 10 0.000294548
Oryza sativa ssp. japonica chr07 1 CH_osa_176 3 5 0.0000152216
Punica granatum NC_045133.1 1 CH_pgr_155 3 3 0.00000384286
Prunus persica Pp08 1 CH_ppe_270 3 4 0.0000121493
Populus trichocarpa Chr18 1 CH_ptr_132 4 4 0.00000000423799
Populus trichocarpa Chr17 1 CH_ptr_330 3 5 0.000077108
Populus trichocarpa Chr01 1 CH_ptr_464 3 8 0.000431234
Quercus lobata 9 1 CH_qlo_309 4 5 0.00000000375626
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_309 3 3 0.000000393344
Simmondsia chinensis GWHAASQ00000016 1 CH_sci_83 3 3 0.00000130492
Sechium edule LG06 1 CH_sed_143 3 3 0.00000870365
Sequoiadendron giganteum chr1 1 CH_sgi_1305 2 2 0.000487151
Theobroma cacao Chromosome_4 1 CH_tca_405 3 11 0.000481943
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_388 3 13 0.000539242
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_313 2 2 0.000278772
Zea mays 3 1 CH_zma_116 3 3 0.00000603944
Arabidopsis lyrata scaffold_2 2 CH_aly_270 3 4 0.000142511
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 2 CH_arhy_100 5 5 0.000000000000396373
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 2 CH_arhy_99 5 5 0.000000000000396373
Arabidopsis thaliana Chr2 2 CH_ath_100 4 5 0.0000000184623
Amborella trichopoda AmTr_v1.0_scaffold00067 2 CH_atr_140 3 5 0.0000113543
Brassica carinata ChrC04 2 CH_bca_5 9 10 1.12663e-22
Brassica carinata ChrB04 2 CH_bca_69 5 5 0.0000000000330629
Brassica oleracea C9 2 CH_bol_12 8 9 1.33358e-20
Camellia sinensis var. sinensis Chr9 2 CH_camsi_141 6 38 0.000000000231895
Cardamine hirsuta Chr3 2 CH_chi_182 3 3 0.00000817004
Cardamine hirsuta Chr7 2 CH_chi_183 3 3 0.00000817004
Carya illinoinensis Chr01 2 CH_cil_508 3 11 0.000531082
Carica papaya supercontig_8 2 CH_cpa_123 3 4 0.0000197303
Capsella rubella scaffold_2 2 CH_cru_124 4 4 0.0000000479879
Capsella rubella scaffold_6 2 CH_cru_170 4 6 0.000000718546
Cucumis sativus L. chr5 2 CH_csa_182 3 5 0.0000475205
Erythranthe guttata scaffold_8 2 CH_egut_97 4 4 0.000000000828192
Eutrema salsugineum scaffold_7 2 CH_esa_76 4 4 0.0000000363085
Gossypium hirsutum D07 2 CH_ghi_2 24 30 5.04882e-60
Gossypium hirsutum A07 2 CH_ghi_278 4 4 0.00000025252
Gossypium hirsutum D11 2 CH_ghi_40 9 16 1.04364e-17
Gossypium hirsutum A06 2 CH_ghi_583 3 3 0.000189138
Gossypium hirsutum A11 2 CH_ghi_9 11 12 1.71795e-26
Glycine max Gm08 2 CH_gma_409 3 7 0.000220913
Gossypium raimondii Chr07 2 CH_gra_186 4 9 0.00000208803
Gossypium raimondii Chr01 2 CH_gra_266 3 4 0.0000854835
Hydrangea macrophylla Hma1.2p1_0349F.1 2 CH_hma_314 3 8 0.000227569
Lupinus albus Lalb_Chr22 2 CH_lal_140 3 3 0.00000636284
Malus domestica Chr16 2 CH_mdo_593 3 10 0.000294548
Oryza sativa ssp. japonica chr07 2 CH_osa_176 3 5 0.0000152216
Punica granatum NC_045133.1 2 CH_pgr_155 3 3 0.00000384286
Prunus persica Pp08 2 CH_ppe_270 3 4 0.0000121493
Populus trichocarpa Chr18 2 CH_ptr_132 4 4 0.00000000423799
Populus trichocarpa Chr17 2 CH_ptr_330 3 5 0.000077108
Populus trichocarpa Chr01 2 CH_ptr_464 3 8 0.000431234
Quercus lobata 9 2 CH_qlo_309 4 5 0.00000000375626
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_309 3 3 0.000000393344
Simmondsia chinensis GWHAASQ00000016 2 CH_sci_83 3 3 0.00000130492
Sechium edule LG06 2 CH_sed_143 3 3 0.00000870365
Sequoiadendron giganteum chr1 2 CH_sgi_1305 2 2 0.000487151
Theobroma cacao Chromosome_4 2 CH_tca_405 3 11 0.000481943
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_388 3 13 0.000539242
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_313 2 2 0.000278772
Zea mays 3 2 CH_zma_116 3 3 0.00000603944

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001