Functional clusters
Information
- Type MapMan
- Description Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.STIG1-peptide activity.STIG1/GRI-precursor polypeptide
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 1 | CH_arhy_252 | 3 | 3 | 0.000000295785 |
| Brassica carinata | ChrB08 | 1 | CH_bca_548 | 3 | 6 | 0.0000242656 |
| Brassica oleracea | C8 | 1 | CH_bol_175 | 3 | 6 | 0.00000528677 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 1 | CH_bvu_223 | 2 | 2 | 0.000248375 |
| Cannabis sativa | NC_044371.1 | 1 | CH_cansat_395 | 2 | 2 | 0.000984963 |
| Corylus avellana | 2 | 1 | CH_cav_197 | 3 | 6 | 0.0000148043 |
| Citrus clementina | scaffold_1 | 1 | CH_ccl_154 | 4 | 15 | 0.000000284206 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_181 | 3 | 3 | 0.000000847901 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_54 | 4 | 4 | 0.000000000091233 |
| Carya illinoinensis | Chr09 | 1 | CH_cil_75 | 5 | 6 | 0.0000000000000511528 |
| Citrullus lanatus | CG_Chr03 | 1 | CH_cla_87 | 3 | 10 | 0.0000141551 |
| Cucumis melo | chr12 | 1 | CH_cme_131 | 3 | 11 | 0.0000110077 |
| Carica papaya | supercontig_12 | 1 | CH_cpa_249 | 3 | 16 | 0.000151533 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 1 | CH_cqu_202 | 3 | 4 | 0.000000754275 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1373 | 1 | CH_cqu_73 | 4 | 5 | 0.000000000111692 |
| Cucumis sativus L. | chr1 | 1 | CH_csa_175 | 3 | 15 | 0.0000190074 |
| Davidia involucrata | GWHABJS00000020 | 1 | CH_din_76 | 4 | 8 | 0.00000000551385 |
| Durio zibethinus | NW_019167982.1 | 1 | CH_dzi_51 | 4 | 5 | 0.000000000492818 |
| Fragaria x ananassa | Fvb3-1 | 1 | CH_fan_226 | 3 | 4 | 0.00000234163 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_83 | 4 | 5 | 0.00000000064394 |
| Gossypium hirsutum | A05 | 1 | CH_ghi_159 | 4 | 4 | 0.00000000100236 |
| Gossypium hirsutum | D05 | 1 | CH_ghi_160 | 4 | 4 | 0.00000000100236 |
| Gossypium hirsutum | A04 | 1 | CH_ghi_182 | 4 | 5 | 0.00000000501052 |
| Gossypium hirsutum | A01 | 1 | CH_ghi_245 | 4 | 9 | 0.000000126134 |
| Gossypium hirsutum | D01 | 1 | CH_ghi_283 | 4 | 11 | 0.000000330181 |
| Gossypium hirsutum | D05 | 1 | CH_ghi_366 | 3 | 3 | 0.00000312821 |
| Gossypium raimondii | Chr02 | 1 | CH_gra_149 | 4 | 11 | 0.000000277097 |
| Gossypium raimondii | Chr09 | 1 | CH_gra_45 | 5 | 5 | 0.000000000000270657 |
| Gossypium raimondii | Chr09 | 1 | CH_gra_55 | 5 | 6 | 0.0000000000016235 |
| Helianthus annuus | HanXRQChr15 | 1 | CH_han_161 | 4 | 5 | 0.000000000618816 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 1 | CH_hma_159 | 2 | 2 | 0.000111086 |
| Lotus japonicus | chr6 | 1 | CH_lja_165 | 3 | 3 | 0.000000920437 |
| Lonicera japonica | GWHAAZE00000006 | 1 | CH_lonja_37 | 6 | 6 | 1.45636e-18 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 1 | CH_lsa_129 | 5 | 26 | 0.00000000441446 |
| Malus domestica | Chr05 | 1 | CH_mdo_256 | 3 | 3 | 0.000000981464 |
| Malus domestica | Chr10 | 1 | CH_mdo_58 | 5 | 5 | 0.0000000000000465793 |
| Malus domestica | Chr11 | 1 | CH_mdo_759 | 3 | 18 | 0.000798599 |
| Manihot esculenta | Chromosome15 | 1 | CH_mes_171 | 4 | 11 | 0.000000111411 |
| Manihot esculenta | Chromosome03 | 1 | CH_mes_207 | 3 | 3 | 0.00000123051 |
| Manihot esculenta | Chromosome16 | 1 | CH_mes_208 | 3 | 3 | 0.00000123051 |
| Marchantia polymorpha | scaffold_117 | 1 | CH_mpo_4 | 9 | 9 | 1.5279e-24 |
| Marchantia polymorpha | scaffold_48 | 1 | CH_mpo_57 | 3 | 3 | 0.0000149306 |
| Medicago truncatula | chr7 | 1 | CH_mtr_375 | 3 | 3 | 0.00000172188 |
| Medicago truncatula | chr2 | 1 | CH_mtr_376 | 3 | 3 | 0.00000172188 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_26 | 5 | 5 | 0.0000000000000542734 |
| Nicotiana tabacum | Nitab4.5_0001409 | 1 | CH_nta_92 | 2 | 2 | 0.000109727 |
| Prunus persica | Pp04 | 1 | CH_ppe_281 | 3 | 4 | 0.0000151863 |
| Prunus persica | Pp04 | 1 | CH_ppe_74 | 5 | 5 | 0.00000000000069756 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_92 | 3 | 3 | 0.0000000408165 |
| Populus trichocarpa | Chr11 | 1 | CH_ptr_141 | 4 | 5 | 0.00000000689206 |
| Populus trichocarpa | Chr04 | 1 | CH_ptr_66 | 5 | 5 | 0.000000000000518086 |
| Quercus lobata | 5 | 1 | CH_qlo_219 | 4 | 4 | 0.0000000000289022 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_63 | 6 | 10 | 8.16086e-16 |
| Rhododendron simsii | chr13 | 1 | CH_rsi_58 | 5 | 6 | 0.0000000000000983268 |
| Striga asiatica | scaffold196 | 1 | CH_sas_151 | 2 | 2 | 0.000938057 |
| Salix brachista | GWHAAZH00000004 | 1 | CH_sbr_32 | 5 | 5 | 0.000000000000516622 |
| Simmondsia chinensis | GWHAASQ00000005 | 1 | CH_sci_249 | 2 | 2 | 0.000510856 |
| Sechium edule | LG01 | 1 | CH_sed_55 | 4 | 9 | 0.00000000480151 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_294 | 3 | 9 | 0.0000520325 |
| Theobroma cacao | Chromosome_6 | 1 | CH_tca_52 | 5 | 8 | 0.0000000000030441 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 1 | CH_tpr_181 | 3 | 5 | 0.0000103097 |
| Utricularia gibba | unitig_37 | 1 | CH_ugi_85 | 3 | 4 | 0.00000181289 |
| Vigna mungo | CM024075.1 | 1 | CH_vmu_417 | 2 | 2 | 0.000969211 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 2 | CH_arhy_252 | 3 | 3 | 0.000000295785 |
| Brassica carinata | ChrB08 | 2 | CH_bca_548 | 3 | 6 | 0.0000242656 |
| Brassica oleracea | C8 | 2 | CH_bol_175 | 3 | 6 | 0.00000528677 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 2 | CH_bvu_223 | 2 | 2 | 0.000248375 |
| Cannabis sativa | NC_044371.1 | 2 | CH_cansat_395 | 2 | 2 | 0.000984963 |
| Corylus avellana | 2 | 2 | CH_cav_197 | 3 | 6 | 0.0000148043 |
| Citrus clementina | scaffold_1 | 2 | CH_ccl_154 | 4 | 15 | 0.000000284206 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_181 | 3 | 3 | 0.000000847901 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_54 | 4 | 4 | 0.000000000091233 |
| Carya illinoinensis | Chr09 | 2 | CH_cil_75 | 5 | 6 | 0.0000000000000511528 |
| Citrullus lanatus | CG_Chr03 | 2 | CH_cla_87 | 3 | 10 | 0.0000141551 |
| Cucumis melo | chr12 | 2 | CH_cme_131 | 3 | 11 | 0.0000110077 |
| Carica papaya | supercontig_12 | 2 | CH_cpa_249 | 3 | 16 | 0.000151533 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 2 | CH_cqu_202 | 3 | 4 | 0.000000754275 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1373 | 2 | CH_cqu_73 | 4 | 5 | 0.000000000111692 |
| Cucumis sativus L. | chr1 | 2 | CH_csa_175 | 3 | 15 | 0.0000190074 |
| Davidia involucrata | GWHABJS00000020 | 2 | CH_din_76 | 4 | 8 | 0.00000000551385 |
| Durio zibethinus | NW_019167982.1 | 2 | CH_dzi_51 | 4 | 5 | 0.000000000492818 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_462 | 3 | 3 | 0.000000179842 |
| Fragaria x ananassa | Fvb3-1 | 2 | CH_fan_226 | 3 | 4 | 0.00000234163 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_83 | 4 | 5 | 0.00000000064394 |
| Gossypium hirsutum | A05 | 2 | CH_ghi_159 | 4 | 4 | 0.00000000100236 |
| Gossypium hirsutum | D05 | 2 | CH_ghi_160 | 4 | 4 | 0.00000000100236 |
| Gossypium hirsutum | A04 | 2 | CH_ghi_182 | 4 | 5 | 0.00000000501052 |
| Gossypium hirsutum | A01 | 2 | CH_ghi_245 | 4 | 9 | 0.000000126134 |
| Gossypium hirsutum | D01 | 2 | CH_ghi_283 | 4 | 11 | 0.000000330181 |
| Gossypium hirsutum | D05 | 2 | CH_ghi_366 | 3 | 3 | 0.00000312821 |
| Gossypium raimondii | Chr02 | 2 | CH_gra_149 | 4 | 11 | 0.000000277097 |
| Gossypium raimondii | Chr09 | 2 | CH_gra_45 | 5 | 5 | 0.000000000000270657 |
| Gossypium raimondii | Chr09 | 2 | CH_gra_55 | 5 | 6 | 0.0000000000016235 |
| Helianthus annuus | HanXRQChr15 | 2 | CH_han_161 | 4 | 5 | 0.000000000618816 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 2 | CH_hma_159 | 2 | 2 | 0.000111086 |
| Lotus japonicus | chr6 | 2 | CH_lja_165 | 3 | 3 | 0.000000920437 |
| Lotus japonicus | chr6 | 2 | CH_lja_236 | 4 | 46 | 0.0000372684 |
| Lonicera japonica | GWHAAZE00000006 | 2 | CH_lonja_37 | 6 | 6 | 1.45636e-18 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 2 | CH_lsa_129 | 5 | 26 | 0.00000000441446 |
| Malus domestica | Chr05 | 2 | CH_mdo_256 | 3 | 3 | 0.000000981464 |
| Malus domestica | Chr10 | 2 | CH_mdo_58 | 5 | 5 | 0.0000000000000465793 |
| Malus domestica | Chr11 | 2 | CH_mdo_759 | 3 | 18 | 0.000798599 |
| Manihot esculenta | Chromosome15 | 2 | CH_mes_171 | 4 | 11 | 0.000000111411 |
| Manihot esculenta | Chromosome03 | 2 | CH_mes_207 | 3 | 3 | 0.00000123051 |
| Manihot esculenta | Chromosome16 | 2 | CH_mes_208 | 3 | 3 | 0.00000123051 |
| Marchantia polymorpha | scaffold_117 | 2 | CH_mpo_4 | 9 | 9 | 1.5279e-24 |
| Marchantia polymorpha | scaffold_48 | 2 | CH_mpo_57 | 3 | 3 | 0.0000149306 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_26 | 5 | 5 | 0.0000000000000542734 |
| Nicotiana tabacum | Nitab4.5_0001409 | 2 | CH_nta_92 | 2 | 2 | 0.000109727 |
| Prunus persica | Pp04 | 2 | CH_ppe_281 | 3 | 4 | 0.0000151863 |
| Prunus persica | Pp04 | 2 | CH_ppe_74 | 5 | 5 | 0.00000000000069756 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_92 | 3 | 3 | 0.0000000408165 |
| Populus trichocarpa | Chr11 | 2 | CH_ptr_141 | 4 | 5 | 0.00000000689206 |
| Populus trichocarpa | Chr04 | 2 | CH_ptr_66 | 5 | 5 | 0.000000000000518086 |
| Quercus lobata | 5 | 2 | CH_qlo_219 | 4 | 4 | 0.0000000000289022 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_63 | 6 | 10 | 8.16086e-16 |
| Rhododendron simsii | chr13 | 2 | CH_rsi_58 | 5 | 6 | 0.0000000000000983268 |
| Striga asiatica | scaffold196 | 2 | CH_sas_151 | 2 | 2 | 0.000938057 |
| Salix brachista | GWHAAZH00000004 | 2 | CH_sbr_32 | 5 | 5 | 0.000000000000516622 |
| Simmondsia chinensis | GWHAASQ00000005 | 2 | CH_sci_249 | 2 | 2 | 0.000510856 |
| Sechium edule | LG01 | 2 | CH_sed_55 | 4 | 9 | 0.00000000480151 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_294 | 3 | 9 | 0.0000520325 |
| Theobroma cacao | Chromosome_6 | 2 | CH_tca_52 | 5 | 8 | 0.0000000000030441 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 2 | CH_tpr_181 | 3 | 5 | 0.0000103097 |
| Utricularia gibba | unitig_37 | 2 | CH_ugi_85 | 3 | 4 | 0.00000181289 |
| Vigna mungo | CM024075.1 | 2 | CH_vmu_417 | 2 | 2 | 0.000969211 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |