Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.GASA/GAST-peptide activity.GASA-precursor polypeptide

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_383 3 3 0.0000132834
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 1 CH_arhy_384 3 3 0.0000132834
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 1 CH_arhy_436 3 4 0.0000531108
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_66 6 6 0.00000000000000207746
Brassica carinata ChrB07 1 CH_bca_1070 3 9 0.000659697
Beta vulgaris Chr5_EL10_PGA_scaffold2 1 CH_bvu_128 3 3 0.00000839022
Beta vulgaris Chr1_EL10_PGA_scaffold3 1 CH_bvu_143 3 4 0.0000335439
Camellia sinensis var. sinensis Chr4 1 CH_camsi_34 7 8 2.02695e-18
Capsicum annuum PGAv.1.6.scaffold869 1 CH_can_191 3 3 0.00000292783
Carya illinoinensis Chr16 1 CH_cil_284 3 3 0.0000047026
Carya illinoinensis Chr07 1 CH_cil_285 3 3 0.0000047026
Chenopodium quinoa C_Quinoa_Scaffold_2654 1 CH_cqu_305 3 6 0.000045763
Durio zibethinus NW_019168004.1 1 CH_dzi_175 3 3 0.0000175814
Durio zibethinus NW_019167960.1 1 CH_dzi_176 3 3 0.0000175814
Eucalyptus grandis Chr06 1 CH_egr_210 6 8 0.000000000000841645
Eucalyptus grandis Chr06 1 CH_egr_86 8 8 2.24372e-20
Erythranthe guttata scaffold_3 1 CH_egut_239 3 3 0.000012248
Fragaria vesca Fvb2 1 CH_fve_189 3 3 0.00000114527
Helianthus annuus HanXRQChr10 1 CH_han_554 3 7 0.000228978
Lupinus albus Lalb_Chr05 1 CH_lal_220 3 4 0.0000541139
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_266 3 3 0.00000527098
Malus domestica Chr15 1 CH_mdo_150 4 4 0.00000000388573
Malus domestica Chr08 1 CH_mdo_410 3 5 0.0000787578
Medicago truncatula chr5 1 CH_mtr_396 4 14 0.0000031021
Medicago truncatula chr6 1 CH_mtr_554 3 5 0.0000657873
Nelumbo nucifera chr4 1 CH_nnu_131 3 3 0.00000159695
Petunia axillaris Peaxi162Scf00219 1 CH_pax_21 6 10 0.000000000000100691
Punica granatum NC_045127.1 1 CH_pgr_160 3 3 0.00000472967
Pisum sativum chr6LG2 1 CH_psa_65 4 4 0.00000000377089
Papaver somniferum NC_039364.1 1 CH_pso_146 4 4 0.00000000140271
Papaver somniferum NW_020649304.1 1 CH_pso_337 3 3 0.00000415178
Papaver somniferum NC_039361.1 1 CH_pso_338 3 3 0.00000415178
Populus trichocarpa Chr02 1 CH_ptr_252 3 3 0.00000485607
Phaseolus vulgaris Chr01 1 CH_pvu_60 5 5 0.0000000000116145
Quercus lobata CM012294 1 CH_qlo_56 7 7 4.74821e-20
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_339 4 4 0.000000000631272
Solanum lycopersicum SL4.0ch06 1 CH_sly_237 3 3 0.00000687296
Solanum lycopersicum SL4.0ch12 1 CH_sly_238 3 3 0.00000687296
Solanum pennellii Spenn-ch06 1 CH_spe_203 3 3 0.00000338311
Theobroma cacao Chromosome_8 1 CH_tca_228 3 3 0.00000547137
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_185 3 4 0.0000156378
Tripterygium wilfordii NC_052242.1 1 CH_twi_25 5 5 0.000000000000316532
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_383 3 3 0.0000132834
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 2 CH_arhy_384 3 3 0.0000132834
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 2 CH_arhy_436 3 4 0.0000531108
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_66 6 6 0.00000000000000207746
Brassica carinata ChrB07 2 CH_bca_1070 3 9 0.000659697
Beta vulgaris Chr5_EL10_PGA_scaffold2 2 CH_bvu_128 3 3 0.00000839022
Beta vulgaris Chr1_EL10_PGA_scaffold3 2 CH_bvu_143 3 4 0.0000335439
Camellia sinensis var. sinensis Chr4 2 CH_camsi_34 7 8 2.02695e-18
Capsicum annuum PGAv.1.6.scaffold869 2 CH_can_191 3 3 0.00000292783
Carya illinoinensis Chr16 2 CH_cil_284 3 3 0.0000047026
Carya illinoinensis Chr07 2 CH_cil_285 3 3 0.0000047026
Chenopodium quinoa C_Quinoa_Scaffold_2654 2 CH_cqu_305 3 6 0.000045763
Durio zibethinus NW_019168004.1 2 CH_dzi_175 3 3 0.0000175814
Durio zibethinus NW_019167960.1 2 CH_dzi_176 3 3 0.0000175814
Eucalyptus grandis Chr06 2 CH_egr_210 6 8 0.000000000000841645
Eucalyptus grandis Chr06 2 CH_egr_86 8 8 2.24372e-20
Erythranthe guttata scaffold_3 2 CH_egut_239 3 3 0.000012248
Fragaria vesca Fvb2 2 CH_fve_189 3 3 0.00000114527
Helianthus annuus HanXRQChr10 2 CH_han_554 3 7 0.000228978
Lupinus albus Lalb_Chr05 2 CH_lal_220 3 4 0.0000541139
Lotus japonicus Contig00155 2 CH_lja_211 4 15 0.00000721598
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_266 3 3 0.00000527098
Malus domestica Chr15 2 CH_mdo_150 4 4 0.00000000388573
Malus domestica Chr08 2 CH_mdo_410 3 5 0.0000787578
Nelumbo nucifera chr4 2 CH_nnu_131 3 3 0.00000159695
Petunia axillaris Peaxi162Scf00219 2 CH_pax_21 6 10 0.000000000000100691
Punica granatum NC_045127.1 2 CH_pgr_160 3 3 0.00000472967
Pisum sativum chr6LG2 2 CH_psa_65 4 4 0.00000000377089
Papaver somniferum NC_039364.1 2 CH_pso_146 4 4 0.00000000140271
Papaver somniferum NW_020649304.1 2 CH_pso_337 3 3 0.00000415178
Papaver somniferum NC_039361.1 2 CH_pso_338 3 3 0.00000415178
Populus trichocarpa Chr02 2 CH_ptr_252 3 3 0.00000485607
Phaseolus vulgaris Chr01 2 CH_pvu_60 5 5 0.0000000000116145
Quercus lobata CM012294 2 CH_qlo_56 7 7 4.74821e-20
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_339 4 4 0.000000000631272
Solanum lycopersicum SL4.0ch06 2 CH_sly_237 3 3 0.00000687296
Solanum lycopersicum SL4.0ch12 2 CH_sly_238 3 3 0.00000687296
Solanum pennellii Spenn-ch06 2 CH_spe_203 3 3 0.00000338311
Theobroma cacao Chromosome_8 2 CH_tca_228 3 3 0.00000547137
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_185 3 4 0.0000156378
Tripterygium wilfordii NC_052242.1 2 CH_twi_25 5 5 0.000000000000316532

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001