Functional clusters
Information
- Type MapMan
- Description Phytohormone action.abscisic acid.conjugation and degradation.abscisic acid UDP-glycosyltransferase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 1 | CH_aar_208 | 2 | 2 | 0.000273698 |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_57 | 4 | 7 | 0.000000000452825 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_21 | 5 | 11 | 0.0000000000000490128 |
| Brassica carinata | ChrB06 | 1 | CH_bca_173 | 4 | 8 | 0.0000000099329 |
| Brassica carinata | ChrB04 | 1 | CH_bca_350 | 3 | 3 | 0.000000781396 |
| Brassica carinata | ChrC01 | 1 | CH_bca_577 | 3 | 8 | 0.000043726 |
| Brassica carinata | ChrC05 | 1 | CH_bca_824 | 3 | 13 | 0.000223151 |
| Brassica napus | A03 | 1 | CH_bna_251 | 3 | 3 | 0.000000500238 |
| Brassica napus | C05 | 1 | CH_bna_331 | 3 | 5 | 0.00000500118 |
| Brassica napus | C03 | 1 | CH_bna_364 | 3 | 6 | 0.0000100012 |
| Brassica napus | A05 | 1 | CH_bna_90 | 4 | 5 | 0.000000000371169 |
| Brassica oleracea | C5 | 1 | CH_bol_157 | 3 | 5 | 0.00000264369 |
| Brassica oleracea | C3 | 1 | CH_bol_176 | 3 | 6 | 0.00000528677 |
| Brassica rapa | A03 | 1 | CH_bra_106 | 3 | 3 | 0.000000456177 |
| Brassica rapa | A05 | 1 | CH_bra_57 | 4 | 6 | 0.00000000117478 |
| Cardamine hirsuta | Chr3 | 1 | CH_chi_16 | 6 | 7 | 1.73994e-18 |
| Capsella rubella | scaffold_3 | 1 | CH_cru_51 | 5 | 9 | 0.00000000000680199 |
| Eutrema salsugineum | scaffold_13 | 1 | CH_esa_86 | 3 | 4 | 0.000000139167 |
| Schrenkiella parvula | ch3-1 | 1 | CH_spa_105 | 3 | 5 | 0.000000371906 |
| Aethionema arabicum | LG-8 | 2 | CH_aar_208 | 2 | 2 | 0.000273698 |
| Arabidopsis lyrata | scaffold_3 | 2 | CH_aly_57 | 4 | 7 | 0.000000000452825 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_21 | 5 | 11 | 0.0000000000000490128 |
| Brassica carinata | ChrB06 | 2 | CH_bca_173 | 4 | 8 | 0.0000000099329 |
| Brassica carinata | ChrB04 | 2 | CH_bca_350 | 3 | 3 | 0.000000781396 |
| Brassica carinata | ChrC01 | 2 | CH_bca_577 | 3 | 8 | 0.000043726 |
| Brassica carinata | ChrC05 | 2 | CH_bca_824 | 3 | 13 | 0.000223151 |
| Brassica oleracea | C5 | 2 | CH_bol_157 | 3 | 5 | 0.00000264369 |
| Brassica oleracea | C3 | 2 | CH_bol_176 | 3 | 6 | 0.00000528677 |
| Brassica rapa | A03 | 2 | CH_bra_106 | 3 | 3 | 0.000000456177 |
| Brassica rapa | A05 | 2 | CH_bra_57 | 4 | 6 | 0.00000000117478 |
| Cardamine hirsuta | Chr3 | 2 | CH_chi_16 | 6 | 7 | 1.73994e-18 |
| Capsella rubella | scaffold_3 | 2 | CH_cru_51 | 5 | 9 | 0.00000000000680199 |
| Eutrema salsugineum | scaffold_13 | 2 | CH_esa_86 | 3 | 4 | 0.000000139167 |
| Schrenkiella parvula | ch3-1 | 2 | CH_spa_105 | 3 | 5 | 0.000000371906 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |