Functional clusters
Information
- Type MapMan
- Description Phytohormone action.abscisic acid.perception and signalling.receptor activities.recruitment factor (CAR)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_2 | 1 | CH_aly_148 | 3 | 3 | 0.000000784211 |
| Aquilegia oxysepala | CHR03 | 1 | CH_aox_214 | 2 | 2 | 0.000240597 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 1 | CH_arhy_349 | 3 | 5 | 0.00000489253 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_137 | 3 | 3 | 0.000000147742 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 1 | CH_atr_86 | 3 | 5 | 0.0000000946587 |
| Brassica carinata | ChrC08 | 1 | CH_bca_411 | 3 | 3 | 0.00000373973 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_117 | 3 | 7 | 0.00000143908 |
| Camellia sinensis var. sinensis | Chr6 | 1 | CH_camsi_203 | 4 | 9 | 0.000000007649 |
| Cannabis sativa | NC_044376.1 | 1 | CH_cansat_83 | 4 | 8 | 0.00000000416012 |
| Corylus avellana | 11 | 1 | CH_cav_165 | 3 | 7 | 0.00000308499 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3399 | 1 | CH_cqu_532 | 2 | 2 | 0.000710732 |
| Capsella rubella | scaffold_2 | 1 | CH_cru_171 | 3 | 3 | 0.000000962292 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_464 | 2 | 2 | 0.000956663 |
| Eucalyptus grandis | Chr10 | 1 | CH_egr_256 | 4 | 4 | 0.0000000000421052 |
| Fragaria x ananassa | Fvb1-1 | 1 | CH_fan_225 | 3 | 4 | 0.00000234163 |
| Fragaria x ananassa | Fvb1-3 | 1 | CH_fan_287 | 3 | 6 | 0.0000117052 |
| Fragaria vesca | Fvb1 | 1 | CH_fve_191 | 3 | 4 | 0.00000116593 |
| Malus domestica | Chr09 | 1 | CH_mdo_86 | 4 | 4 | 0.0000000000114522 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_267 | 2 | 2 | 0.000158437 |
| Petunia axillaris | Peaxi162Scf00159 | 1 | CH_pax_345 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045130.1 | 1 | CH_pgr_122 | 3 | 3 | 0.000000295604 |
| Prunus persica | Pp03 | 1 | CH_ppe_175 | 3 | 3 | 0.0000000834721 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_112 | 3 | 3 | 0.000000142858 |
| Phaseolus vulgaris | Chr03 | 1 | CH_pvu_454 | 2 | 2 | 0.000734727 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_263 | 3 | 4 | 0.0000000953515 |
| Selenicereus undatus | Scaffold_3410 | 1 | CH_sun_272 | 2 | 2 | 0.000726639 |
| Trochodendron aralioides | group13 | 1 | CH_tar_420 | 2 | 2 | 0.00036022 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_413 | 2 | 2 | 0.000929238 |
| Arabidopsis lyrata | scaffold_2 | 2 | CH_aly_148 | 3 | 3 | 0.000000784211 |
| Aquilegia oxysepala | CHR03 | 2 | CH_aox_214 | 2 | 2 | 0.000240597 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 2 | CH_arhy_349 | 3 | 5 | 0.00000489253 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_137 | 3 | 3 | 0.000000147742 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 2 | CH_atr_86 | 3 | 5 | 0.0000000946587 |
| Brassica carinata | ChrC08 | 2 | CH_bca_411 | 3 | 3 | 0.00000373973 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_117 | 3 | 7 | 0.00000143908 |
| Camellia sinensis var. sinensis | Chr6 | 2 | CH_camsi_203 | 4 | 9 | 0.000000007649 |
| Cannabis sativa | NC_044376.1 | 2 | CH_cansat_83 | 4 | 8 | 0.00000000416012 |
| Corylus avellana | 11 | 2 | CH_cav_165 | 3 | 7 | 0.00000308499 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3399 | 2 | CH_cqu_532 | 2 | 2 | 0.000710732 |
| Capsella rubella | scaffold_2 | 2 | CH_cru_171 | 3 | 3 | 0.000000962292 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_464 | 2 | 2 | 0.000956663 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_256 | 4 | 4 | 0.0000000000421052 |
| Fragaria x ananassa | Fvb1-1 | 2 | CH_fan_225 | 3 | 4 | 0.00000234163 |
| Fragaria x ananassa | Fvb1-3 | 2 | CH_fan_287 | 3 | 6 | 0.0000117052 |
| Fragaria vesca | Fvb1 | 2 | CH_fve_191 | 3 | 4 | 0.00000116593 |
| Malus domestica | Chr09 | 2 | CH_mdo_86 | 4 | 4 | 0.0000000000114522 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_267 | 2 | 2 | 0.000158437 |
| Petunia axillaris | Peaxi162Scf00159 | 2 | CH_pax_345 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045130.1 | 2 | CH_pgr_122 | 3 | 3 | 0.000000295604 |
| Prunus persica | Pp03 | 2 | CH_ppe_175 | 3 | 3 | 0.0000000834721 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_112 | 3 | 3 | 0.000000142858 |
| Phaseolus vulgaris | Chr03 | 2 | CH_pvu_454 | 2 | 2 | 0.000734727 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_263 | 3 | 4 | 0.0000000953515 |
| Selenicereus undatus | Scaffold_3410 | 2 | CH_sun_272 | 2 | 2 | 0.000726639 |
| Trochodendron aralioides | group13 | 2 | CH_tar_420 | 2 | 2 | 0.00036022 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_413 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |