Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.carbon dioxide-bicarbonate interconversion.alpha-type carbonic anhydrase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_209 3 3 0.00000991516
Acer truncatum chr1 1 CH_acertr_210 3 3 0.00000991516
Acer truncatum chr8 1 CH_acertr_8 8 9 4.99367e-21
Acer truncatum chr8 1 CH_acertr_80 4 4 0.00000000629134
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 1 CH_amhyb_212 2 2 0.000252525
Arabidopsis thaliana Chr4 1 CH_ath_409 2 2 0.000601633
Amborella trichopoda AmTr_v1.0_scaffold00157 1 CH_atr_51 4 6 0.000000000789487
Brassica carinata ChrC05 1 CH_bca_443 3 4 0.00000630482
Beta vulgaris Chr7_EL10_PGA_scaffold5 1 CH_bvu_122 3 7 0.00000359726
Camellia sinensis var. sinensis Chr10 1 CH_camsi_19 8 11 2.85121e-22
Camellia sinensis var. sinensis Chr4 1 CH_camsi_479 3 5 0.000017654
Cannabis sativa NC_044372.1 1 CH_cansat_167 3 6 0.00000452574
Cicer arietinum L. Ca_LG6_v3 1 CH_car_280 2 2 0.000466981
Corylus avellana 10 1 CH_cav_141 3 3 0.000000740683
Corylus avellana 6 1 CH_cav_59 4 5 0.000000000851718
Chara braunii BFEA01000104 1 CH_cbr_7 5 19 0.000000000130511
Coffea canephora chr6 1 CH_ccan_385 2 7 0.000958224
Citrus clementina scaffold_8 1 CH_ccl_495 2 2 0.000820311
Ceratophyllum demersum 5 1 CH_cde_44 3 3 0.000000785991
Carya illinoinensis Chr13 1 CH_cil_96 5 6 0.00000000000199438
Citrullus lanatus CG_Chr03 1 CH_cla_22 4 6 0.00000000395719
Cucumis melo chr12 1 CH_cme_52 5 15 0.000000000352559
Cucumis melo chr04 1 CH_cme_53 4 4 0.000000000440925
Carica papaya supercontig_182 1 CH_cpa_66 3 3 0.00000013557
Chenopodium quinoa C_Quinoa_Scaffold_1001 1 CH_cqu_621 2 2 0.000995025
Chenopodium quinoa C_Quinoa_Scaffold_2185 1 CH_cqu_622 2 2 0.000995025
Chlamydomonas reinhardtii chromosome_4 1 CH_cre_50 2 2 0.0003412
Cucumis sativus L. chr1 1 CH_csa_45 5 7 0.00000000000605497
Cucumis sativus L. chr3 1 CH_csa_66 4 4 0.000000000863903
Daucus carota DCARv2_Chr3 1 CH_dca_177 3 6 0.00000683064
Davidia involucrata GWHABJS00000010 1 CH_din_514 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_467 2 2 0.000448722
Eucalyptus grandis Chr01 1 CH_egr_50 9 14 7.8223e-25
Erythranthe guttata scaffold_10 1 CH_egut_80 4 4 0.000000000145947
Fragaria x ananassa Fvb6-3 1 CH_fan_123 4 11 0.0000000458351
Fragaria x ananassa Fvb6-2 1 CH_fan_301 3 6 0.0000158116
Fragaria vesca Fvb6 1 CH_fve_35 6 21 0.000000000000181611
Gossypium hirsutum A01 1 CH_ghi_312 3 3 0.000000872691
Helianthus annuus HanXRQChr01 1 CH_han_172 4 5 0.00000000205971
Helianthus annuus HanXRQChr04 1 CH_han_309 3 3 0.00000152317
Helianthus annuus HanXRQChr11 1 CH_han_74 6 19 0.000000000000649437
Lotus japonicus chr5 1 CH_lja_140 3 3 0.000000268461
Lonicera japonica GWHAAZE00000001 1 CH_lonja_77 5 6 0.00000000000014587
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_199 3 3 0.000000221936
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_225 3 4 0.000000887636
Magnolia biondii Chr17 1 CH_mbi_146 5 60 0.0000000522923
Magnolia biondii Chr03 1 CH_mbi_223 3 4 0.00000169802
Malus domestica Chr12 1 CH_mdo_126 4 5 0.000000000584789
Manihot esculenta Chromosome11 1 CH_mes_127 4 5 0.00000000169034
Marchantia polymorpha scaffold_12 1 CH_mpo_8 7 10 8.63185e-16
Medicago truncatula chr1 1 CH_mtr_325 3 4 0.000000354476
Olea europaea chr4 1 CH_oeu_122 3 8 0.000013395
Oryza sativa ssp. japonica chr08 1 CH_osa_146 3 4 0.0000020079
Punica granatum NC_045128.1 1 CH_pgr_118 3 3 0.000000168917
Physcomitrium patens Chr07 1 CH_ppa_1 8 10 5.91604e-22
Physcomitrium patens Chr26 1 CH_ppa_9 5 9 0.0000000000581191
Prunus persica Pp04 1 CH_ppe_433 3 13 0.000392878
Prunus persica Pp07 1 CH_ppe_68 5 5 0.000000000000107317
Pisum sativum chr6LG2 1 CH_psa_59 4 8 0.00000000208574
Phaseolus vulgaris Chr07 1 CH_pvu_323 3 14 0.000164746
Quercus lobata 1 1 CH_qlo_598 3 5 0.0000181834
Quercus lobata 7 1 CH_qlo_65 7 9 3.45499e-19
Quercus lobata 7 1 CH_qlo_923 3 12 0.000399313
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_159 5 24 0.000000000371165
Rhododendron simsii chr03 1 CH_rsi_117 4 5 0.00000000084639
Sechium edule LG14 1 CH_sed_123 3 3 0.00000218355
Sechium edule LG11 1 CH_sed_47 4 4 0.000000000778948
Sequoiadendron giganteum chr4 1 CH_sgi_1166 4 71 0.000164818
Sequoiadendron giganteum chr10 1 CH_sgi_364 4 6 0.00000000257445
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_695 3 7 0.00002739
Solanum lycopersicum SL4.0ch06 1 CH_sly_180 3 3 0.000000289388
Selaginella moellendorffii scaffold_45 1 CH_smo_59 3 3 0.0000126723
Solanum pennellii Spenn-ch06 1 CH_spe_572 2 2 0.00093406
Selenicereus undatus Scaffold_19641 1 CH_sun_266 2 3 0.000653935
Trochodendron aralioides group2 1 CH_tar_170 3 3 0.00000118949
Trochodendron aralioides group2 1 CH_tar_55 4 4 0.000000000321377
Theobroma cacao Chromosome_5 1 CH_tca_230 3 6 0.00000562982
Vigna mungo CM024071.1 1 CH_vmu_369 3 18 0.000428126
Vitis vinifera chrUn 1 CH_vvi_437 2 2 0.00076063
Acer truncatum chr3 2 CH_acertr_209 3 3 0.00000991516
Acer truncatum chr1 2 CH_acertr_210 3 3 0.00000991516
Acer truncatum chr8 2 CH_acertr_8 8 9 4.99367e-21
Acer truncatum chr8 2 CH_acertr_80 4 4 0.00000000629134
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 2 CH_amhyb_212 2 2 0.000252525
Arabidopsis thaliana Chr4 2 CH_ath_409 2 2 0.000601633
Amborella trichopoda AmTr_v1.0_scaffold00157 2 CH_atr_51 4 6 0.000000000789487
Brassica carinata ChrC05 2 CH_bca_443 3 4 0.00000630482
Beta vulgaris Chr7_EL10_PGA_scaffold5 2 CH_bvu_122 3 7 0.00000359726
Camellia sinensis var. sinensis Chr10 2 CH_camsi_19 8 11 2.85121e-22
Camellia sinensis var. sinensis Chr4 2 CH_camsi_479 3 5 0.000017654
Cannabis sativa NC_044372.1 2 CH_cansat_167 3 6 0.00000452574
Cicer arietinum L. Ca_LG6_v3 2 CH_car_280 2 2 0.000466981
Corylus avellana 10 2 CH_cav_141 3 3 0.000000740683
Corylus avellana 6 2 CH_cav_59 4 5 0.000000000851718
Chara braunii BFEA01000104 2 CH_cbr_7 5 19 0.000000000130511
Coffea canephora chr6 2 CH_ccan_385 2 7 0.000958224
Citrus clementina scaffold_8 2 CH_ccl_495 2 2 0.000820311
Ceratophyllum demersum 5 2 CH_cde_44 3 3 0.000000785991
Carya illinoinensis Chr13 2 CH_cil_96 5 6 0.00000000000199438
Citrullus lanatus CG_Chr03 2 CH_cla_22 4 6 0.00000000395719
Cucumis melo chr12 2 CH_cme_52 5 15 0.000000000352559
Cucumis melo chr04 2 CH_cme_53 4 4 0.000000000440925
Carica papaya supercontig_182 2 CH_cpa_66 3 3 0.00000013557
Chenopodium quinoa C_Quinoa_Scaffold_1001 2 CH_cqu_621 2 2 0.000995025
Chenopodium quinoa C_Quinoa_Scaffold_2185 2 CH_cqu_622 2 2 0.000995025
Chlamydomonas reinhardtii chromosome_4 2 CH_cre_50 2 2 0.0003412
Cucumis sativus L. chr1 2 CH_csa_45 5 7 0.00000000000605497
Cucumis sativus L. chr3 2 CH_csa_66 4 4 0.000000000863903
Daucus carota DCARv2_Chr3 2 CH_dca_177 3 6 0.00000683064
Davidia involucrata GWHABJS00000010 2 CH_din_514 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_467 2 2 0.000448722
Eucalyptus grandis Chr01 2 CH_egr_50 9 14 7.8223e-25
Erythranthe guttata scaffold_10 2 CH_egut_80 4 4 0.000000000145947
Fragaria x ananassa Fvb6-3 2 CH_fan_123 4 11 0.0000000458351
Fragaria x ananassa Fvb6-2 2 CH_fan_301 3 6 0.0000158116
Fragaria vesca Fvb6 2 CH_fve_35 6 21 0.000000000000181611
Gossypium hirsutum A01 2 CH_ghi_312 3 3 0.000000872691
Helianthus annuus HanXRQChr01 2 CH_han_172 4 5 0.00000000205971
Helianthus annuus HanXRQChr04 2 CH_han_309 3 3 0.00000152317
Helianthus annuus HanXRQChr11 2 CH_han_74 6 19 0.000000000000649437
Lotus japonicus chr5 2 CH_lja_140 3 3 0.000000268461
Lonicera japonica GWHAAZE00000001 2 CH_lonja_77 5 6 0.00000000000014587
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_199 3 3 0.000000221936
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_225 3 4 0.000000887636
Magnolia biondii Chr17 2 CH_mbi_146 5 60 0.0000000522923
Magnolia biondii Chr03 2 CH_mbi_223 3 4 0.00000169802
Malus domestica Chr12 2 CH_mdo_126 4 5 0.000000000584789
Manihot esculenta Chromosome11 2 CH_mes_127 4 5 0.00000000169034
Marchantia polymorpha scaffold_12 2 CH_mpo_8 7 10 8.63185e-16
Olea europaea chr4 2 CH_oeu_122 3 8 0.000013395
Oryza sativa ssp. japonica chr08 2 CH_osa_146 3 4 0.0000020079
Punica granatum NC_045128.1 2 CH_pgr_118 3 3 0.000000168917
Physcomitrium patens Chr07 2 CH_ppa_1 8 10 5.91604e-22
Physcomitrium patens Chr26 2 CH_ppa_9 5 9 0.0000000000581191
Prunus persica Pp04 2 CH_ppe_433 3 13 0.000392878
Prunus persica Pp07 2 CH_ppe_68 5 5 0.000000000000107317
Pisum sativum chr6LG2 2 CH_psa_59 4 8 0.00000000208574
Phaseolus vulgaris Chr07 2 CH_pvu_323 3 14 0.000164746
Quercus lobata 1 2 CH_qlo_598 3 5 0.0000181834
Quercus lobata 7 2 CH_qlo_65 7 9 3.45499e-19
Quercus lobata 7 2 CH_qlo_923 3 12 0.000399313
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_159 5 24 0.000000000371165
Rhododendron simsii chr03 2 CH_rsi_117 4 5 0.00000000084639
Sechium edule LG14 2 CH_sed_123 3 3 0.00000218355
Sechium edule LG11 2 CH_sed_47 4 4 0.000000000778948
Sequoiadendron giganteum chr4 2 CH_sgi_1166 4 71 0.000164818
Sequoiadendron giganteum chr10 2 CH_sgi_364 4 6 0.00000000257445
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_695 3 7 0.00002739
Solanum lycopersicum SL4.0ch06 2 CH_sly_180 3 3 0.000000289388
Selaginella moellendorffii scaffold_45 2 CH_smo_59 3 3 0.0000126723
Solanum pennellii Spenn-ch06 2 CH_spe_572 2 2 0.00093406
Selenicereus undatus Scaffold_19641 2 CH_sun_266 2 3 0.000653935
Trochodendron aralioides group2 2 CH_tar_170 3 3 0.00000118949
Trochodendron aralioides group2 2 CH_tar_55 4 4 0.000000000321377
Theobroma cacao Chromosome_5 2 CH_tca_230 3 6 0.00000562982
Vigna mungo CM024071.1 2 CH_vmu_369 3 18 0.000428126
Vitis vinifera chrUn 2 CH_vvi_437 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001