Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.CAM/C4 photosynthesis.phosphoenolpyruvate (PEP) carboxylase activity.PEP carboxylase regulatory kinase (PPCK)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR05 1 CH_aox_165 2 2 0.0000801989
Ceratophyllum demersum 2 1 CH_cde_50 3 6 0.00000187085
Carpinus fangiana Cfa02 1 CH_cfa_307 2 2 0.000227204
Petunia axillaris Peaxi162Scf00135 1 CH_pax_309 2 2 0.000422134
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_409 3 3 0.00000000355983
Solanum lycopersicum SL4.0ch04 1 CH_sly_480 2 2 0.000352164
Solanum pennellii Spenn-ch04 1 CH_spe_437 2 2 0.000266874
Solanum tuberosum ST4.03ch04 1 CH_stu_565 2 2 0.000512453
Tarenaya hassleriana NW_010966881.1 1 CH_tha_177 2 2 0.000419082
Aquilegia oxysepala CHR05 2 CH_aox_165 2 2 0.0000801989
Ceratophyllum demersum 2 2 CH_cde_50 3 6 0.00000187085
Carpinus fangiana Cfa02 2 CH_cfa_307 2 2 0.000227204
Petunia axillaris Peaxi162Scf00135 2 CH_pax_309 2 2 0.000422134
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_409 3 3 0.00000000355983
Solanum lycopersicum SL4.0ch04 2 CH_sly_480 2 2 0.000352164
Solanum pennellii Spenn-ch04 2 CH_spe_437 2 2 0.000266874
Solanum tuberosum ST4.03ch04 2 CH_stu_565 2 2 0.000512453
Tarenaya hassleriana NW_010966881.1 2 CH_tha_177 2 2 0.000419082

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001