Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo regulation.lysine N-methyltransferase (RbcMT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 1 CH_acertr_269 2 2 0.000070497
Camellia sinensis var. sinensis Chr6 1 CH_camsi_857 2 6 0.000687758
Capsicum annuum PGAv.1.6.scaffold964 1 CH_can_439 2 5 0.000826003
Hydrangea macrophylla Hma1.2p1_0354F.1 1 CH_hma_158 2 2 0.000111086
Punica granatum NC_045132.1 1 CH_pgr_200 2 2 0.0000750356
Solanum lycopersicum SL4.0ch05 1 CH_sly_309 2 2 0.0000586941
Solanum pennellii Spenn-ch05 1 CH_spe_270 2 2 0.000044479
Solanum tuberosum ST4.03ch05 1 CH_stu_368 2 2 0.0000512453
Acer truncatum chr11 2 CH_acertr_269 2 2 0.000070497
Camellia sinensis var. sinensis Chr6 2 CH_camsi_857 2 6 0.000687758
Capsicum annuum PGAv.1.6.scaffold964 2 CH_can_439 2 5 0.000826003
Eucalyptus grandis Chr02 2 CH_egr_655 3 13 0.0000513746
Hydrangea macrophylla Hma1.2p1_0354F.1 2 CH_hma_158 2 2 0.000111086
Punica granatum NC_045132.1 2 CH_pgr_200 2 2 0.0000750356
Solanum lycopersicum SL4.0ch05 2 CH_sly_309 2 2 0.0000586941
Solanum pennellii Spenn-ch05 2 CH_spe_270 2 2 0.000044479
Solanum tuberosum ST4.03ch05 2 CH_stu_368 2 2 0.0000512453

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001