Functional clusters
Information
- Type MapMan
- Description Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo heterodimer.small subunit
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr11 | 1 | CH_acertr_123 | 3 | 3 | 0.00000007455 |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_91 | 3 | 3 | 0.0000000261404 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 1 | CH_amhyb_66 | 3 | 5 | 0.00000212514 |
| Aquilegia oxysepala | CHR03 | 1 | CH_aox_213 | 2 | 2 | 0.000240597 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 1 | CH_arhy_625 | 2 | 2 | 0.000449075 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_141 | 3 | 7 | 0.000000172348 |
| Brassica carinata | ChrC03 | 1 | CH_bca_384 | 3 | 5 | 0.00000195999 |
| Brassica carinata | ChrB06 | 1 | CH_bca_833 | 3 | 21 | 0.0002603 |
| Brassica napus | A02 | 1 | CH_bna_314 | 3 | 5 | 0.00000289038 |
| Brassica napus | C02 | 1 | CH_bna_338 | 3 | 6 | 0.00000578018 |
| Brassica napus | C04 | 1 | CH_bna_365 | 3 | 7 | 0.0000101143 |
| Brassica napus | A04 | 1 | CH_bna_399 | 3 | 8 | 0.0000161813 |
| Brassica oleracea | C2 | 1 | CH_bol_122 | 3 | 4 | 0.000000358955 |
| Brassica oleracea | C4 | 1 | CH_bol_170 | 3 | 8 | 0.00000502381 |
| Brassica rapa | A04 | 1 | CH_bra_156 | 3 | 9 | 0.00000812406 |
| Brassica rapa | A02 | 1 | CH_bra_375 | 2 | 4 | 0.000901558 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_96 | 3 | 4 | 0.000000164502 |
| Capsicum annuum | PGAv.1.6.scaffold625 | 1 | CH_can_30 | 6 | 9 | 2.03624e-16 |
| Cicer arietinum L. | Ca_LG2_v3 | 1 | CH_car_150 | 2 | 2 | 0.0000778301 |
| Chara braunii | BFEA01000219 | 1 | CH_cbr_108 | 2 | 2 | 0.000215781 |
| Carya illinoinensis | Chr15 | 1 | CH_cil_470 | 2 | 2 | 0.000371897 |
| Carica papaya | supercontig_1 | 1 | CH_cpa_179 | 2 | 2 | 0.0000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 1 | CH_cqu_200 | 3 | 4 | 0.000000754275 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1352 | 1 | CH_cqu_201 | 3 | 4 | 0.000000754275 |
| Chlamydomonas reinhardtii | chromosome_2 | 1 | CH_cre_27 | 2 | 2 | 0.000113733 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_111 | 3 | 3 | 0.0000000320764 |
| Glycine max | Gm19 | 1 | CH_gma_200 | 3 | 5 | 0.000000756233 |
| Gossypium raimondii | Chr07 | 1 | CH_gra_343 | 2 | 2 | 0.000321664 |
| Helianthus annuus | HanXRQChr11 | 1 | CH_han_126 | 4 | 4 | 0.0000000000571305 |
| Lotus japonicus | chr1 | 1 | CH_lja_109 | 3 | 3 | 0.0000000767031 |
| Lonicera japonica | GWHAAZE00000006 | 1 | CH_lonja_453 | 2 | 2 | 0.000179662 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 1 | CH_lsa_46 | 5 | 5 | 0.00000000000000293218 |
| Micromonas commoda | Chr_03 | 1 | CH_mco_11 | 2 | 2 | 0.000197961 |
| Malus domestica | Chr13 | 1 | CH_mdo_731 | 2 | 2 | 0.000796344 |
| Marchantia polymorpha | scaffold_114 | 1 | CH_mpo_3 | 9 | 9 | 1.5279e-24 |
| Marchantia polymorpha | scaffold_146 | 1 | CH_mpo_56 | 3 | 3 | 0.0000149306 |
| Medicago truncatula | chr7 | 1 | CH_mtr_95 | 5 | 8 | 0.0000000000000670172 |
| Nelumbo nucifera | chr4 | 1 | CH_nnu_81 | 3 | 4 | 0.000000028517 |
| Nicotiana tabacum | Nitab4.5_0000912 | 1 | CH_nta_12 | 4 | 4 | 0.0000000000594605 |
| Oryza sativa ssp. japonica | chr12 | 1 | CH_osa_144 | 3 | 7 | 0.00000146395 |
| Petunia axillaris | Peaxi162Scf00394 | 1 | CH_pax_344 | 2 | 2 | 0.000703556 |
| Physcomitrium patens | Chr13 | 1 | CH_ppa_17 | 5 | 11 | 0.00000000826533 |
| Pisum sativum | chr3LG5 | 1 | CH_psa_10 | 6 | 9 | 2.04397e-17 |
| Papaver somniferum | NW_020620714.1 | 1 | CH_pso_313 | 3 | 4 | 0.00000138478 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_330 | 3 | 5 | 0.00000346157 |
| Phaseolus vulgaris | Chr04 | 1 | CH_pvu_115 | 3 | 4 | 0.0000000323894 |
| Striga asiatica | scaffold42 | 1 | CH_sas_126 | 2 | 4 | 0.000562805 |
| Salvia bowleyana | GWHASIU00000003 | 1 | CH_sbo_107 | 3 | 3 | 0.00000000310517 |
| Simmondsia chinensis | GWHAASQ00000011 | 1 | CH_sci_209 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_1077 | 2 | 2 | 0.000146145 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_514 | 2 | 2 | 0.000586941 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_161 | 3 | 5 | 0.000000237394 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_193 | 1 | CH_tpr_213 | 2 | 2 | 0.0000756974 |
| Acer truncatum | chr11 | 2 | CH_acertr_123 | 3 | 3 | 0.00000007455 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_91 | 3 | 3 | 0.0000000261404 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 2 | CH_amhyb_66 | 3 | 5 | 0.00000212514 |
| Aquilegia oxysepala | CHR03 | 2 | CH_aox_213 | 2 | 2 | 0.000240597 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 2 | CH_arhy_625 | 2 | 2 | 0.000449075 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_141 | 3 | 7 | 0.000000172348 |
| Brassica carinata | ChrC03 | 2 | CH_bca_384 | 3 | 5 | 0.00000195999 |
| Brassica carinata | ChrB06 | 2 | CH_bca_833 | 3 | 21 | 0.0002603 |
| Brassica oleracea | C2 | 2 | CH_bol_122 | 3 | 4 | 0.000000358955 |
| Brassica oleracea | C4 | 2 | CH_bol_170 | 3 | 8 | 0.00000502381 |
| Brassica rapa | A04 | 2 | CH_bra_156 | 3 | 9 | 0.00000812406 |
| Brassica rapa | A02 | 2 | CH_bra_375 | 2 | 4 | 0.000901558 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_96 | 3 | 4 | 0.000000164502 |
| Capsicum annuum | PGAv.1.6.scaffold625 | 2 | CH_can_30 | 6 | 9 | 2.03624e-16 |
| Cicer arietinum L. | Ca_LG2_v3 | 2 | CH_car_150 | 2 | 2 | 0.0000778301 |
| Chara braunii | BFEA01000219 | 2 | CH_cbr_108 | 2 | 2 | 0.000215781 |
| Carya illinoinensis | Chr15 | 2 | CH_cil_470 | 2 | 2 | 0.000371897 |
| Carica papaya | supercontig_1 | 2 | CH_cpa_179 | 2 | 2 | 0.0000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 2 | CH_cqu_200 | 3 | 4 | 0.000000754275 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1352 | 2 | CH_cqu_201 | 3 | 4 | 0.000000754275 |
| Chlamydomonas reinhardtii | chromosome_2 | 2 | CH_cre_27 | 2 | 2 | 0.000113733 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_111 | 3 | 3 | 0.0000000320764 |
| Gossypium hirsutum | A11 | 2 | CH_ghi_811 | 2 | 2 | 0.000747644 |
| Gossypium hirsutum | D11 | 2 | CH_ghi_812 | 2 | 2 | 0.000747644 |
| Glycine max | Gm19 | 2 | CH_gma_200 | 3 | 5 | 0.000000756233 |
| Gossypium raimondii | Chr07 | 2 | CH_gra_343 | 2 | 2 | 0.000321664 |
| Helianthus annuus | HanXRQChr11 | 2 | CH_han_126 | 4 | 4 | 0.0000000000571305 |
| Lotus japonicus | chr1 | 2 | CH_lja_109 | 3 | 3 | 0.0000000767031 |
| Lonicera japonica | GWHAAZE00000006 | 2 | CH_lonja_453 | 2 | 2 | 0.000179662 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 2 | CH_lsa_46 | 5 | 5 | 0.00000000000000293218 |
| Micromonas commoda | Chr_03 | 2 | CH_mco_11 | 2 | 2 | 0.000197961 |
| Malus domestica | Chr13 | 2 | CH_mdo_731 | 2 | 2 | 0.000796344 |
| Marchantia polymorpha | scaffold_114 | 2 | CH_mpo_3 | 9 | 9 | 1.5279e-24 |
| Marchantia polymorpha | scaffold_146 | 2 | CH_mpo_56 | 3 | 3 | 0.0000149306 |
| Nelumbo nucifera | chr4 | 2 | CH_nnu_81 | 3 | 4 | 0.000000028517 |
| Nicotiana tabacum | Nitab4.5_0000912 | 2 | CH_nta_12 | 4 | 4 | 0.0000000000594605 |
| Oryza sativa ssp. japonica | chr12 | 2 | CH_osa_144 | 3 | 7 | 0.00000146395 |
| Petunia axillaris | Peaxi162Scf00394 | 2 | CH_pax_344 | 2 | 2 | 0.000703556 |
| Physcomitrium patens | Chr13 | 2 | CH_ppa_17 | 5 | 11 | 0.00000000826533 |
| Pisum sativum | chr3LG5 | 2 | CH_psa_10 | 6 | 9 | 2.04397e-17 |
| Papaver somniferum | NW_020620714.1 | 2 | CH_pso_313 | 3 | 4 | 0.00000138478 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_330 | 3 | 5 | 0.00000346157 |
| Phaseolus vulgaris | Chr04 | 2 | CH_pvu_115 | 3 | 4 | 0.0000000323894 |
| Striga asiatica | scaffold42 | 2 | CH_sas_126 | 2 | 4 | 0.000562805 |
| Salvia bowleyana | GWHASIU00000003 | 2 | CH_sbo_107 | 3 | 3 | 0.00000000310517 |
| Simmondsia chinensis | GWHAASQ00000011 | 2 | CH_sci_209 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_1077 | 2 | 2 | 0.000146145 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_514 | 2 | 2 | 0.000586941 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_161 | 3 | 5 | 0.000000237394 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_193 | 2 | CH_tpr_213 | 2 | 2 | 0.0000756974 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |