Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.regulatory protein (FLAP1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR06 1 CH_aox_318 2 3 0.000721742
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 1 CH_arhy_566 2 2 0.000299383
Corchorus olitorius AWUE01015649.1 1 CH_col_14 5 20 0.000000000845379
Chlamydomonas reinhardtii chromosome_11 1 CH_cre_57 2 2 0.0006824
Capsella rubella scaffold_2 1 CH_cru_59 4 7 0.0000000000410409
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_46 4 7 0.00000000000948685
Erythranthe guttata scaffold_14 1 CH_egut_34 5 6 0.00000000000000126522
Eutrema salsugineum scaffold_8 1 CH_esa_154 2 2 0.0000761499
Fragaria x ananassa Fvb6-1 1 CH_fan_109 4 6 0.0000000260407
Fragaria x ananassa Fvb6-2 1 CH_fan_19 7 21 0.00000000000000682658
Fragaria x ananassa Fvb6-3 1 CH_fan_315 3 4 0.0000202913
Fragaria x ananassa Fvb6-3 1 CH_fan_77 4 4 0.00000000173701
Fragaria vesca Fvb6 1 CH_fve_103 4 6 0.00000000657533
Helianthus annuus HanXRQChr10 1 CH_han_44 5 8 0.0000000000000056193
Lupinus albus Lalb_Chr15 1 CH_lal_294 2 2 0.000314895
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_22 6 8 2.26086e-19
Papaver somniferum NC_039359.1 1 CH_pso_464 2 2 0.00013514
Papaver somniferum NC_039367.1 1 CH_pso_465 2 2 0.00013514
Quercus lobata 6 1 CH_qlo_206 4 4 0.00000000000619333
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_36 7 15 1.62726e-20
Aquilegia oxysepala CHR06 2 CH_aox_318 2 3 0.000721742
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 2 CH_arhy_566 2 2 0.000299383
Corchorus olitorius AWUE01015649.1 2 CH_col_14 5 20 0.000000000845379
Chlamydomonas reinhardtii chromosome_11 2 CH_cre_57 2 2 0.0006824
Capsella rubella scaffold_2 2 CH_cru_59 4 7 0.0000000000410409
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_46 4 7 0.00000000000948685
Erythranthe guttata scaffold_14 2 CH_egut_34 5 6 0.00000000000000126522
Eutrema salsugineum scaffold_8 2 CH_esa_154 2 2 0.0000761499
Fragaria x ananassa Fvb6-1 2 CH_fan_109 4 6 0.0000000260407
Fragaria x ananassa Fvb6-2 2 CH_fan_19 7 21 0.00000000000000682658
Fragaria x ananassa Fvb6-3 2 CH_fan_315 3 4 0.0000202913
Fragaria x ananassa Fvb6-3 2 CH_fan_77 4 4 0.00000000173701
Fragaria vesca Fvb6 2 CH_fve_103 4 6 0.00000000657533
Helianthus annuus HanXRQChr10 2 CH_han_44 5 8 0.0000000000000056193
Lupinus albus Lalb_Chr15 2 CH_lal_294 2 2 0.000314895
Lotus japonicus chr6 2 CH_lja_306 2 2 0.000214523
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_22 6 8 2.26086e-19
Papaver somniferum NC_039359.1 2 CH_pso_464 2 2 0.00013514
Papaver somniferum NC_039367.1 2 CH_pso_465 2 2 0.00013514
Quercus lobata 6 2 CH_qlo_206 4 4 0.00000000000619333
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_36 7 15 1.62726e-20

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001